Literature DB >> 33750914

Cell-autonomous immune gene expression is repressed in pulmonary neuroendocrine cells and small cell lung cancer.

Ling Cai1,2,3, Hongyu Liu4,5, Fang Huang6, Junya Fujimoto7, Luc Girard8,9,10, Jun Chen5,11, Yongwen Li5, Yu-An Zhang9, Dhruba Deb9, Victor Stastny9, Karine Pozo12, Christin S Kuo13, Gaoxiang Jia4, Chendong Yang6, Wei Zou14, Adeeb Alomar9, Kenneth Huffman9, Mahboubeh Papari-Zareei9, Lin Yang15, Benjamin Drapkin8,9,12, Esra A Akbay16, David S Shames14, Ignacio I Wistuba7, Tao Wang4,8, Jane E Johnson8,10,17, Guanghua Xiao4,8,18, Ralph J DeBerardinis6,8,19, John D Minna20,21,22,23, Yang Xie24,25,26, Adi F Gazdar8,9,16.   

Abstract

Small cell lung cancer (SCLC) is classified as a high-grade neuroendocrine (NE) tumor, but a subset of SCLC has been termed "variant" due to the loss of NE characteristics. In this study, we computed NE scores for patient-derived SCLC cell lines and xenografts, as well as human tumors. We aligned NE properties with transcription factor-defined molecular subtypes. Then we investigated the different immune phenotypes associated with high and low NE scores. We found repression of immune response genes as a shared feature between classic SCLC and pulmonary neuroendocrine cells of the healthy lung. With loss of NE fate, variant SCLC tumors regain cell-autonomous immune gene expression and exhibit higher tumor-immune interactions. Pan-cancer analysis revealed this NE lineage-specific immune phenotype in other cancers. Additionally, we observed MHC I re-expression in SCLC upon development of chemoresistance. These findings may help guide the design of treatment regimens in SCLC.

Entities:  

Year:  2021        PMID: 33750914      PMCID: PMC7943563          DOI: 10.1038/s42003-021-01842-7

Source DB:  PubMed          Journal:  Commun Biol        ISSN: 2399-3642


  89 in total

Review 1.  Molecular subtypes of small cell lung cancer: a synthesis of human and mouse model data.

Authors:  Charles M Rudin; John T Poirier; Lauren Averett Byers; Caroline Dive; Afshin Dowlati; Julie George; John V Heymach; Jane E Johnson; Jonathan M Lehman; David MacPherson; Pierre P Massion; John D Minna; Trudy G Oliver; Vito Quaranta; Julien Sage; Roman K Thomas; Christopher R Vakoc; Adi F Gazdar
Journal:  Nat Rev Cancer       Date:  2019-05       Impact factor: 60.716

2.  The 2015 World Health Organization Classification of Lung Tumors: Impact of Genetic, Clinical and Radiologic Advances Since the 2004 Classification.

Authors:  William D Travis; Elisabeth Brambilla; Andrew G Nicholson; Yasushi Yatabe; John H M Austin; Mary Beth Beasley; Lucian R Chirieac; Sanja Dacic; Edwina Duhig; Douglas B Flieder; Kim Geisinger; Fred R Hirsch; Yuichi Ishikawa; Keith M Kerr; Masayuki Noguchi; Giuseppe Pelosi; Charles A Powell; Ming Sound Tsao; Ignacio Wistuba
Journal:  J Thorac Oncol       Date:  2015-09       Impact factor: 15.609

3.  Small-cell lung cancer: what we know, what we need to know and the path forward.

Authors:  Adi F Gazdar; Paul A Bunn; John D Minna
Journal:  Nat Rev Cancer       Date:  2017-11-10       Impact factor: 60.716

4.  IkappaB kinases phosphorylate NF-kappaB p65 subunit on serine 536 in the transactivation domain.

Authors:  H Sakurai; H Chiba; H Miyoshi; T Sugita; W Toriumi
Journal:  J Biol Chem       Date:  1999-10-22       Impact factor: 5.157

5.  Toil enables reproducible, open source, big biomedical data analyses.

Authors:  John Vivian; Arjun Arkal Rao; Frank Austin Nothaft; Christopher Ketchum; Joel Armstrong; Adam Novak; Jacob Pfeil; Jake Narkizian; Alden D Deran; Audrey Musselman-Brown; Hannes Schmidt; Peter Amstutz; Brian Craft; Mary Goldman; Kate Rosenbloom; Melissa Cline; Brian O'Connor; Megan Hanna; Chet Birger; W James Kent; David A Patterson; Anthony D Joseph; Jingchun Zhu; Sasha Zaranek; Gad Getz; David Haussler; Benedict Paten
Journal:  Nat Biotechnol       Date:  2017-04-11       Impact factor: 54.908

6.  Next-generation characterization of the Cancer Cell Line Encyclopedia.

Authors:  Mahmoud Ghandi; Franklin W Huang; Judit Jané-Valbuena; Gregory V Kryukov; Christopher C Lo; E Robert McDonald; Jordi Barretina; Ellen T Gelfand; Craig M Bielski; Haoxin Li; Kevin Hu; Alexander Y Andreev-Drakhlin; Jaegil Kim; Julian M Hess; Brian J Haas; François Aguet; Barbara A Weir; Michael V Rothberg; Brenton R Paolella; Michael S Lawrence; Rehan Akbani; Yiling Lu; Hong L Tiv; Prafulla C Gokhale; Antoine de Weck; Ali Amin Mansour; Coyin Oh; Juliann Shih; Kevin Hadi; Yanay Rosen; Jonathan Bistline; Kavitha Venkatesan; Anupama Reddy; Dmitriy Sonkin; Manway Liu; Joseph Lehar; Joshua M Korn; Dale A Porter; Michael D Jones; Javad Golji; Giordano Caponigro; Jordan E Taylor; Caitlin M Dunning; Amanda L Creech; Allison C Warren; James M McFarland; Mahdi Zamanighomi; Audrey Kauffmann; Nicolas Stransky; Marcin Imielinski; Yosef E Maruvka; Andrew D Cherniack; Aviad Tsherniak; Francisca Vazquez; Jacob D Jaffe; Andrew A Lane; David M Weinstock; Cory M Johannessen; Michael P Morrissey; Frank Stegmeier; Robert Schlegel; William C Hahn; Gad Getz; Gordon B Mills; Jesse S Boehm; Todd R Golub; Levi A Garraway; William R Sellers
Journal:  Nature       Date:  2019-05-08       Impact factor: 49.962

7.  Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.

Authors:  Maxim V Kuleshov; Matthew R Jones; Andrew D Rouillard; Nicolas F Fernandez; Qiaonan Duan; Zichen Wang; Simon Koplev; Sherry L Jenkins; Kathleen M Jagodnik; Alexander Lachmann; Michael G McDermott; Caroline D Monteiro; Gregory W Gundersen; Avi Ma'ayan
Journal:  Nucleic Acids Res       Date:  2016-05-03       Impact factor: 16.971

Review 8.  Origins, genetic landscape, and emerging therapies of small cell lung cancer.

Authors:  Ekaterina A Semenova; Remco Nagel; Anton Berns
Journal:  Genes Dev       Date:  2015-07-15       Impact factor: 11.361

9.  YAP and TAZ modulate cell phenotype in a subset of small cell lung cancer.

Authors:  Masafumi Horie; Akira Saito; Mitsuhiro Ohshima; Hiroshi I Suzuki; Takahide Nagase
Journal:  Cancer Sci       Date:  2016-11-25       Impact factor: 6.716

10.  A molecular cell atlas of the human lung from single-cell RNA sequencing.

Authors:  Kyle J Travaglini; Ahmad N Nabhan; Lolita Penland; Rahul Sinha; Astrid Gillich; Rene V Sit; Stephen Chang; Stephanie D Conley; Yasuo Mori; Jun Seita; Gerald J Berry; Joseph B Shrager; Ross J Metzger; Christin S Kuo; Norma Neff; Irving L Weissman; Stephen R Quake; Mark A Krasnow
Journal:  Nature       Date:  2020-11-18       Impact factor: 49.962

View more
  11 in total

Review 1.  Infiltrating T lymphocytes in the tumor microenvironment of small cell lung cancer: a state of knowledge review.

Authors:  Yamei Chen; Ying Jin; Xiao Hu; Ming Chen
Journal:  J Cancer Res Clin Oncol       Date:  2022-01-08       Impact factor: 4.553

2.  Protein Expression of immune checkpoints STING and MHCII in small cell lung cancer.

Authors:  Zoltan Lohinai; Balazs Dome; David Dora; Christopher Rivard; Hui Yu; Shivaun Lueke Pickard; Viktoria Laszlo; Tunde Harko; Zsolt Megyesfalvi; Csongor Gerdan; Elek Dinya; Konrad Hoetzenecker; Fred R Hirsch
Journal:  Cancer Immunol Immunother       Date:  2022-08-17       Impact factor: 6.630

3.  Targeting Lysine-Specific Demethylase 1 Rescues Major Histocompatibility Complex Class I Antigen Presentation and Overcomes Programmed Death-Ligand 1 Blockade Resistance in SCLC.

Authors:  Evelyn M Nguyen; Hirokazu Taniguchi; Joseph M Chan; Yingqian A Zhan; Xiaoping Chen; Juan Qiu; Elisa de Stanchina; Viola Allaj; Nisargbhai S Shah; Fathema Uddin; Parvathy Manoj; Michael Liu; Sheng F Cai; Ross Levine; Álvaro Quintanal-Villalonga; Triparna Sen; Andrew Chow; Charles M Rudin
Journal:  J Thorac Oncol       Date:  2022-06-09       Impact factor: 20.121

4.  Chemotherapy- and Immune-Related Gene Panel in Prognosis Prediction and Immune Microenvironment of SCLC.

Authors:  Meng-Yu Chen; Yue-Can Zeng; Xi-He Zhao
Journal:  Front Cell Dev Biol       Date:  2022-06-15

5.  Lymphocyte activation gene-3 is associated with programmed death-ligand 1 and programmed cell death protein 1 in small cell lung cancer.

Authors:  Hui Sun; Jiawei Dai; Lishu Zhao; Jun Zhu; Hao Wang; Peixin Chen; Hui Lu; Qiankun Chen; Zhemin Zhang
Journal:  Ann Transl Med       Date:  2021-09

Review 6.  Killing SCLC: insights into how to target a shapeshifting tumor.

Authors:  Kate D Sutherland; Abbie S Ireland; Trudy G Oliver
Journal:  Genes Dev       Date:  2022-03-01       Impact factor: 11.361

7.  Heterogeneity of neuroendocrine transcriptional states in metastatic small cell lung cancers and patient-derived models.

Authors:  Delphine Lissa; Nobuyuki Takahashi; Parth Desai; Irena Manukyan; Christopher W Schultz; Vinodh Rajapakse; Moises J Velez; Deborah Mulford; Nitin Roper; Samantha Nichols; Rasa Vilimas; Linda Sciuto; Yuanbin Chen; Udayan Guha; Arun Rajan; Devon Atkinson; Rajaa El Meskini; Zoe Weaver Ohler; Anish Thomas
Journal:  Nat Commun       Date:  2022-04-19       Impact factor: 17.694

8.  The Tumor Immune Microenvironment and Frameshift Neoantigen Load Determine Response to PD-L1 Blockade in Extensive-Stage SCLC.

Authors:  Hiroaki Kanemura; Hidetoshi Hayashi; Shuta Tomida; Junko Tanizaki; Shinichiro Suzuki; Yusuke Kawanaka; Asuka Tsuya; Yasushi Fukuda; Hiroyasu Kaneda; Keita Kudo; Takayuki Takahama; Ryosuke Imai; Koji Haratani; Yasutaka Chiba; Tomoyuki Otani; Akihiko Ito; Kazuko Sakai; Kazuto Nishio; Kazuhiko Nakagawa
Journal:  JTO Clin Res Rep       Date:  2022-07-01

Review 9.  Potential cellular endocrinology mechanisms underlying the effects of Chinese herbal medicine therapy on asthma.

Authors:  Zeyu Meng; Huize Chen; Chujun Deng; Shengxi Meng
Journal:  Front Endocrinol (Lausanne)       Date:  2022-08-16       Impact factor: 6.055

Review 10.  Small-Cell Lung Cancer Long-Term Survivor Patients: How to Find a Needle in a Haystack?

Authors:  Andrea Plaja; Teresa Moran; Enric Carcereny; Maria Saigi; Ainhoa Hernández; Marc Cucurull; Marta Domènech
Journal:  Int J Mol Sci       Date:  2021-12-16       Impact factor: 5.923

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.