Literature DB >> 33742002

Linking prokaryotic community composition to carbon biogeochemical cycling across a tropical peat dome in Sarawak, Malaysia.

Simon Peter Dom1,2, Makoto Ikenaga3, Sharon Yu Ling Lau4, Son Radu2, Frazer Midot1, Mui Lan Yap1, Mei-Yee Chin1, Mei Lieng Lo1, Mui Sie Jee1, Nagamitsu Maie5, Lulie Melling1.   

Abstract

Tropical peat swamp forest is a global store of carbon in a water-saturated, anoxic and acidic environment. This ecosystem holds diverse prokaryotic communities that play a major role in nutrient cycling. A study was conducted in which a total of 24 peat soil samples were collected in three forest types in a tropical peat dome in Sarawak, Malaysia namely, Mixed Peat Swamp (MPS), Alan Batu (ABt), and Alan Bunga (ABg) forests to profile the soil prokaryotic communities through meta 16S amplicon analysis using Illumina Miseq. Results showed these ecosystems were dominated by anaerobes and fermenters such as Acidobacteria, Proteobacteria, Actinobacteria and Firmicutes that cover 80-90% of the total prokaryotic abundance. Overall, the microbial community composition was different amongst forest types and depths. Additionally, this study highlighted the prokaryotic communities' composition in MPS was driven by higher humification level and lower pH whereas in ABt and ABg, the less acidic condition and higher organic matter content were the main factors. It was also observed that prokaryotic diversity and abundance were higher in the more oligotrophic ABt and ABg forest despite the constantly waterlogged condition. In MPS, the methanotroph Methylovirgula ligni was found to be the major species in this forest type that utilize methane (CH4), which could potentially be the contributing factor to the low CH4 gas emissions. Aquitalea magnusonii and Paraburkholderia oxyphila, which can degrade aromatic compounds, were the major species in ABt and ABg forests respectively. This information can be advantageous for future study in understanding the underlying mechanisms of environmental-driven alterations in soil microbial communities and its potential implications on biogeochemical processes in relation to peatland management.

Entities:  

Year:  2021        PMID: 33742002     DOI: 10.1038/s41598-021-81865-6

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  40 in total

Review 1.  The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems.

Authors:  Marcel G A van der Heijden; Richard D Bardgett; Nico M van Straalen
Journal:  Ecol Lett       Date:  2007-11-29       Impact factor: 9.492

2.  Development of LNA oligonucleotide-PCR clamping technique in investigating the community structures of plant-associated bacteria.

Authors:  Makoto Ikenaga; Masakazu Tabuchi; Takuya Oyama; Isao Akagi; Masao Sakai
Journal:  Biosci Biotechnol Biochem       Date:  2015-05-06       Impact factor: 2.043

3.  Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers.

Authors:  Martina Stursová; Lucia Zifčáková; Mary Beth Leigh; Robert Burgess; Petr Baldrian
Journal:  FEMS Microbiol Ecol       Date:  2012-03-27       Impact factor: 4.194

4.  Insights into the phylogeny and metabolic potential of a primary tropical peat swamp forest microbial community by metagenomic analysis.

Authors:  Pattanop Kanokratana; Tanaporn Uengwetwanit; Ukrit Rattanachomsri; Benjarat Bunterngsook; Thidarat Nimchua; Sithichoke Tangphatsornruang; Vethachai Plengvidhya; Verawat Champreda; Lily Eurwilaichitr
Journal:  Microb Ecol       Date:  2010-11-06       Impact factor: 4.552

Review 5.  Deciphering Diversity Indices for a Better Understanding of Microbial Communities.

Authors:  Bo-Ra Kim; Jiwon Shin; Robin Guevarra; Jun Hyung Lee; Doo Wan Kim; Kuk-Hwan Seol; Ju-Hoon Lee; Hyeun Bum Kim; Richard Isaacson
Journal:  J Microbiol Biotechnol       Date:  2017-12-28       Impact factor: 2.351

6.  Genomic potential for polysaccharide deconstruction in bacteria.

Authors:  Renaud Berlemont; Adam C Martiny
Journal:  Appl Environ Microbiol       Date:  2015-02       Impact factor: 4.792

7.  QIIME allows analysis of high-throughput community sequencing data.

Authors:  J Gregory Caporaso; Justin Kuczynski; Jesse Stombaugh; Kyle Bittinger; Frederic D Bushman; Elizabeth K Costello; Noah Fierer; Antonio Gonzalez Peña; Julia K Goodrich; Jeffrey I Gordon; Gavin A Huttley; Scott T Kelley; Dan Knights; Jeremy E Koenig; Ruth E Ley; Catherine A Lozupone; Daniel McDonald; Brian D Muegge; Meg Pirrung; Jens Reeder; Joel R Sevinsky; Peter J Turnbaugh; William A Walters; Jeremy Widmann; Tanya Yatsunenko; Jesse Zaneveld; Rob Knight
Journal:  Nat Methods       Date:  2010-04-11       Impact factor: 28.547

8.  Tropical peatland carbon storage linked to global latitudinal trends in peat recalcitrance.

Authors:  Suzanne B Hodgkins; Curtis J Richardson; René Dommain; Hongjun Wang; Paul H Glaser; Brittany Verbeke; B Rose Winkler; Alexander R Cobb; Virginia I Rich; Malak Missilmani; Neal Flanagan; Mengchi Ho; Alison M Hoyt; Charles F Harvey; S Rose Vining; Moira A Hough; Tim R Moore; Pierre J H Richard; Florentino B De La Cruz; Joumana Toufaily; Rasha Hamdan; William T Cooper; Jeffrey P Chanton
Journal:  Nat Commun       Date:  2018-09-07       Impact factor: 14.919

9.  Microbial Community Structure in a Malaysian Tropical Peat Swamp Forest: The Influence of Tree Species and Depth.

Authors:  Chin Chin Too; Alexander Keller; Wiebke Sickel; Sui Mae Lee; Catherine M Yule
Journal:  Front Microbiol       Date:  2018-12-04       Impact factor: 5.640

10.  Litter quality drives the differentiation of microbial communities in the litter horizon across an alpine treeline ecotone in the eastern Tibetan Plateau.

Authors:  Haifeng Zheng; Yamei Chen; Yang Liu; Jian Zhang; Wanqing Yang; Lin Yang; Hongjie Li; Lifeng Wang; Fuzhong Wu; Li Guo
Journal:  Sci Rep       Date:  2018-07-03       Impact factor: 4.379

View more
  1 in total

1.  Effects of Strigolactone on Torreya grandis Gene Expression and Soil Microbial Community Structure Under Simulated Nitrogen Deposition.

Authors:  Chenliang Yu; Qi Wang; Shouke Zhang; Hao Zeng; Weijie Chen; Wenchao Chen; Heqiang Lou; Weiwu Yu; Jiasheng Wu
Journal:  Front Plant Sci       Date:  2022-06-02       Impact factor: 6.627

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.