Literature DB >> 33741760

'Enhancing' red cell fate through epigenetic mechanisms.

Marlies P Rossmann1,2, Leonard I Zon1,2.   

Abstract

PURPOSE OF REVIEW: Transcription of erythroid-specific genes is regulated by the three-dimensional (3D) structure and composition of chromatin, which dynamically changes during erythroid differentiation. Chromatin organization and dynamics are regulated by several epigenetic mechanisms involving DNA (de-)methylation, posttranslational modifications (PTMs) of histones, chromatin-associated structural proteins, and higher-order structural changes and interactions. This review addresses examples of recent developments in several areas delineating the interface of chromatin regulation and erythroid-specific lineage transcription. RECENT
FINDINGS: We survey and discuss recent studies that focus on the erythroid chromatin landscape, erythroid enhancer-promotor interactions, super-enhancer functionality, the role of chromatin modifiers and epigenetic crosstalk, as well as the progress in mapping red blood cell (RBC) trait-associated genetic variants within cis-regulatory elements (CREs) identified in genome-wide association study (GWAS) efforts as a step toward determining their impact on erythroid-specific gene expression.
SUMMARY: As one of the best characterized and accessible cell differentiation systems, erythropoiesis has been at the forefront of studies aiming to conceptualize how chromatin dynamics regulate transcription. New emerging technologies that bring a significantly enhanced spatial and temporal resolution of chromatin structure, and allow investigation of small cell numbers, have advanced our understanding of chromatin dynamics during erythroid differentiation in vivo.
Copyright © 2021 Wolters Kluwer Health, Inc. All rights reserved.

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Year:  2021        PMID: 33741760      PMCID: PMC8695091          DOI: 10.1097/MOH.0000000000000654

Source DB:  PubMed          Journal:  Curr Opin Hematol        ISSN: 1065-6251            Impact factor:   3.284


  79 in total

Review 1.  Transcription factories: gene expression in unions?

Authors:  Heidi Sutherland; Wendy A Bickmore
Journal:  Nat Rev Genet       Date:  2009-07       Impact factor: 53.242

Review 2.  The Role of Nuclear Receptor-Binding SET Domain Family Histone Lysine Methyltransferases in Cancer.

Authors:  Richard L Bennett; Alok Swaroop; Catalina Troche; Jonathan D Licht
Journal:  Cold Spring Harb Perspect Med       Date:  2017-06-01       Impact factor: 6.915

3.  Tissue-specific CTCF-cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo.

Authors:  Lars L P Hanssen; Mira T Kassouf; A Marieke Oudelaar; Daniel Biggs; Chris Preece; Damien J Downes; Matthew Gosden; Jacqueline A Sharpe; Jacqueline A Sloane-Stanley; Jim R Hughes; Benjamin Davies; Douglas R Higgs
Journal:  Nat Cell Biol       Date:  2017-07-24       Impact factor: 28.824

Review 4.  Chromatin modifiers and remodellers: regulators of cellular differentiation.

Authors:  Taiping Chen; Sharon Y R Dent
Journal:  Nat Rev Genet       Date:  2013-12-24       Impact factor: 53.242

5.  Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits.

Authors:  Jacob C Ulirsch; Satish K Nandakumar; Li Wang; Felix C Giani; Xiaolan Zhang; Peter Rogov; Alexandre Melnikov; Patrick McDonel; Ron Do; Tarjei S Mikkelsen; Vijay G Sankaran
Journal:  Cell       Date:  2016-06-02       Impact factor: 41.582

6.  Genetic dissection of the α-globin super-enhancer in vivo.

Authors:  Christian Babbs; James O J Davies; Bryony J Graham; Lars Hanssen; Mira T Kassouf; A Marieke Marieke Oudelaar; Jacqueline A Sharpe; Maria C Suciu; Jelena Telenius; Ruth Williams; Deborah Hay; Jim R Hughes; Christina Rode; Pik-Shan Li; Len A Pennacchio; Jacqueline A Sloane-Stanley; Helena Ayyub; Sue Butler; Tatjana Sauka-Spengler; Richard J Gibbons; Andrew J H Smith; William G Wood; Douglas R Higgs
Journal:  Nat Genet       Date:  2016-07-04       Impact factor: 38.330

7.  The impact of a novel apolipoprotein E and amyloid-β protein precursor-interacting protein on the production of amyloid-β.

Authors:  Paul C R Hopkins; Ricardo Sáinz-Fuertes; Simon Lovestone
Journal:  J Alzheimers Dis       Date:  2011       Impact factor: 4.472

8.  Dynamics of the 4D genome during in vivo lineage specification and differentiation.

Authors:  A Marieke Oudelaar; Robert A Beagrie; Matthew Gosden; Sara de Ornellas; Emily Georgiades; Jon Kerry; Daniel Hidalgo; Joana Carrelha; Arun Shivalingam; Afaf H El-Sagheer; Jelena M Telenius; Tom Brown; Veronica J Buckle; Merav Socolovsky; Douglas R Higgs; Jim R Hughes
Journal:  Nat Commun       Date:  2020-06-01       Impact factor: 14.919

9.  GATA Factor-Mediated Gene Regulation in Human Erythropoiesis.

Authors:  Oriana Romano; Luca Petiti; Tristan Felix; Vasco Meneghini; Michel Portafax; Chiara Antoniani; Mario Amendola; Silvio Bicciato; Clelia Peano; Annarita Miccio
Journal:  iScience       Date:  2020-03-30

10.  Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains.

Authors:  A Marieke Oudelaar; James O J Davies; Lars L P Hanssen; Jelena M Telenius; Ron Schwessinger; Yu Liu; Jill M Brown; Damien J Downes; Andrea M Chiariello; Simona Bianco; Mario Nicodemi; Veronica J Buckle; Job Dekker; Douglas R Higgs; Jim R Hughes
Journal:  Nat Genet       Date:  2018-10-29       Impact factor: 38.330

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