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Literature DB >> 33737356

Deletion Mutants, Archived Transposon Library, and Tagged Protein Constructs of the Model Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough.

Judy D Wall¹, Grant M Zane², Thomas R Juba², Jennifer V Kuehl³, Jayashree Ray⁴, Swapnil R Chhabra⁴, Valentine V Trotter⁵, Maxim Shatsky³, Kara B De León², Kimberly L Keller², Kelly S Bender², Gareth Butland⁵, Adam P Arkin³, Adam M Deutschbauer³.

Abstract

The dissimilatory sulfate-reducing deltaproteobacterium Desulfovibrio vulgaris Hildenborough (ATCC 29579) was chosen by the research collaboration ENIGMA to explore tools and protocols for bringing this anaerobe to model status. Here, we describe a collection of genetic constructs generated by ENIGMA that are available to the research community.

Entities: Chemical Disease Gene Species

Year: 2021 PMID： 33737356 PMCID： PMC7975874 DOI： 10.1128/MRA.00072-21

Source DB: PubMed Journal: Microbiol Resour Announc ISSN： 2576-098X

25 in total

1. The P1' specificity of tobacco etch virus protease.

Authors: Rachel B Kapust; József Tözsér; Terry D Copeland; David S Waugh
Journal: Biochem Biophys Res Commun Date: 2002-06-28 Impact factor: 3.575

2. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.

Authors: John F Heidelberg; Rekha Seshadri; Shelley A Haveman; Christopher L Hemme; Ian T Paulsen; James F Kolonay; Jonathan A Eisen; Naomi Ward; Barbara Methe; Lauren M Brinkac; Sean C Daugherty; Robert T Deboy; Robert J Dodson; A Scott Durkin; Ramana Madupu; William C Nelson; Steven A Sullivan; Derrick Fouts; Daniel H Haft; Jeremy Selengut; Jeremy D Peterson; Tanja M Davidsen; Nikhat Zafar; Liwei Zhou; Diana Radune; George Dimitrov; Mark Hance; Kevin Tran; Hoda Khouri; John Gill; Terry R Utterback; Tamara V Feldblyum; Judy D Wall; Gerrit Voordouw; Claire M Fraser
Journal: Nat Biotechnol Date: 2004-04-11 Impact factor: 54.908

Review 3. Recent advances in dissimilatory sulfate reduction: From metabolic study to application.

Authors: Zeng Qian; Hao Tianwei; Hamish Robert Mackey; Mark C M van Loosdrecht; Chen Guanghao
Journal: Water Res Date: 2018-11-12 Impact factor: 11.236

4. The genetic basis for bacterial mercury methylation.

Authors: Jerry M Parks; Alexander Johs; Mircea Podar; Romain Bridou; Richard A Hurt; Steven D Smith; Stephen J Tomanicek; Yun Qian; Steven D Brown; Craig C Brandt; Anthony V Palumbo; Jeremy C Smith; Judy D Wall; Dwayne A Elias; Liyuan Liang
Journal: Science Date: 2013-02-07 Impact factor: 47.728

Review 5. The dual role of microbes in corrosion.

Authors: Nardy Kip; Johannes A van Veen
Journal: ISME J Date: 2014-09-26 Impact factor: 10.302

6. Methods for engineering sulfate reducing bacteria of the genus Desulfovibrio.

Authors: Kimberly L Keller; Judy D Wall; Swapnil Chhabra
Journal: Methods Enzymol Date: 2011 Impact factor: 1.600

7. Sequential peptide affinity purification system for the systematic isolation and identification of protein complexes from Escherichia coli.

Authors: Mohan Babu; Gareth Butland; Oxana Pogoutse; Joyce Li; Jack F Greenblatt; Andrew Emili
Journal: Methods Mol Biol Date: 2009

8. Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough.

Authors: Kelly S Bender; Huei-Che Bill Yen; Christopher L Hemme; Zamin Yang; Zhili He; Qiang He; Jizhong Zhou; Katherine H Huang; Eric J Alm; Terry C Hazen; Adam P Arkin; Judy D Wall
Journal: Appl Environ Microbiol Date: 2007-07-13 Impact factor: 4.792

9. Unintended Laboratory-Driven Evolution Reveals Genetic Requirements for Biofilm Formation by Desulfovibrio vulgaris Hildenborough.

Authors: Kara B De León; Grant M Zane; Valentine V Trotter; Gregory P Krantz; Adam P Arkin; Gareth P Butland; Peter J Walian; Matthew W Fields; Judy D Wall
Journal: MBio Date: 2017-10-17 Impact factor: 7.867

10. MicrobesOnline: an integrated portal for comparative and functional genomics.

Authors: Paramvir S Dehal; Marcin P Joachimiak; Morgan N Price; John T Bates; Jason K Baumohl; Dylan Chivian; Greg D Friedland; Katherine H Huang; Keith Keller; Pavel S Novichkov; Inna L Dubchak; Eric J Alm; Adam P Arkin
Journal: Nucleic Acids Res Date: 2009-11-11 Impact factor: 16.971