Literature DB >> 33737349

First Report of a SARS-CoV-2 Genome Sequence with a Spike His69-Val70 Deletion and an Asn439Lys Mutation in Morocco.

Tarik Aanniz1, Mouna Ouadghiri1, Mohammed Amine Bendahou1, Mohammed Walid Chemao-Elfihri1, Mohamed Chenaoui2, Hanae Dakka3,4, Afaf Allaoui3,5, Otmane Touzani6, Amina Benaouda7, Bouchra Belefquih3, Saaïd Amzazi8, Lahcen Belyamani9, Azeddine Ibrahimi10.   

Abstract

We report the nearly complete genome sequence and the genetic variations of a clinical sample of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) collected from a nasopharyngeal swab specimen from a male patient from Harhoura-Rabat, Morocco. The sequence, which was obtained using Ion Torrent technology, is valuable as it carries a recently described deletion (His69-Val70) and substitution (Asn439Lys).
Copyright © 2021 Aanniz et al.

Entities:  

Year:  2021        PMID： 33737349      PMCID： PMC7975867          DOI： 10.1128/MRA.00027-21

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  9 in total

1.  Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland.

Authors:  Ana da Silva Filipe; James G Shepherd; Thomas Williams; Joseph Hughes; Elihu Aranday-Cortes; Patawee Asamaphan; Shirin Ashraf; Carlos Balcazar; Kirstyn Brunker; Alasdair Campbell; Stephen Carmichael; Chris Davis; Rebecca Dewar; Michael D Gallagher; Rory Gunson; Verity Hill; Antonia Ho; Ben Jackson; Edward James; Natasha Jesudason; Natasha Johnson; E Carol McWilliam Leitch; Kathy Li; Alasdair MacLean; Daniel Mair; David A McAllister; John T McCrone; Sarah E McDonald; Martin P McHugh; A Keith Morris; Jenna Nichols; Marc Niebel; Kyriaki Nomikou; Richard J Orton; Áine O'Toole; Massimo Palmarini; Benjamin J Parcell; Yasmin A Parr; Andrew Rambaut; Stefan Rooke; Sharif Shaaban; Rajiv Shah; Joshua B Singer; Katherine Smollett; Igor Starinskij; Lily Tong; Vattipally B Sreenu; Elizabeth Wastnedge; Matthew T G Holden; David L Robertson; Kate Templeton; Emma C Thomson
Journal:  Nat Microbiol       Date:  2020-12-21       Impact factor: 17.745

2.  Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity.

Authors:  Emma C Thomson; Laura E Rosen; James G Shepherd; Roberto Spreafico; Ana da Silva Filipe; Jason A Wojcechowskyj; Chris Davis; Luca Piccoli; David J Pascall; Josh Dillen; Spyros Lytras; Nadine Czudnochowski; Rajiv Shah; Marcel Meury; Natasha Jesudason; Anna De Marco; Kathy Li; Jessica Bassi; Aine O'Toole; Dora Pinto; Rachel M Colquhoun; Katja Culap; Ben Jackson; Fabrizia Zatta; Andrew Rambaut; Stefano Jaconi; Vattipally B Sreenu; Jay Nix; Ivy Zhang; Ruth F Jarrett; William G Glass; Martina Beltramello; Kyriaki Nomikou; Matteo Pizzuto; Lily Tong; Elisabetta Cameroni; Tristan I Croll; Natasha Johnson; Julia Di Iulio; Arthur Wickenhagen; Alessandro Ceschi; Aoife M Harbison; Daniel Mair; Paolo Ferrari; Katherine Smollett; Federica Sallusto; Stephen Carmichael; Christian Garzoni; Jenna Nichols; Massimo Galli; Joseph Hughes; Agostino Riva; Antonia Ho; Marco Schiuma; Malcolm G Semple; Peter J M Openshaw; Elisa Fadda; J Kenneth Baillie; John D Chodera; Suzannah J Rihn; Samantha J Lycett; Herbert W Virgin; Amalio Telenti; Davide Corti; David L Robertson; Gyorgy Snell
Journal:  Cell       Date:  2021-01-28       Impact factor: 66.850

3.  Two SARS-CoV-2 Genome Sequences of Isolates from Rural U.S. Patients Harboring the D614G Mutation, Obtained Using Nanopore Sequencing.

Authors:  Piroon Jenjaroenpun; Visanu Wanchai; Kikumi D Ono-Moore; Jennifer Laudadio; Laura P James; Sean H Adams; Fred Prior; Intawat Nookaew; David W Ussery; Thidathip Wongsurawat
Journal:  Microbiol Resour Announc       Date:  2020-12-17

4.  Evaluation of the Ion AmpliSeq SARS-CoV-2 Research Panel by Massive Parallel Sequencing.

Authors:  Federica Alessandrini; Sara Caucci; Valerio Onofri; Filomena Melchionda; Adriano Tagliabracci; Patrizia Bagnarelli; Laura Di Sante; Chiara Turchi; Stefano Menzo
Journal:  Genes (Basel)       Date:  2020-08-12       Impact factor: 4.096

5.  Large scale genomic analysis of 3067 SARS-CoV-2 genomes reveals a clonal geo-distribution and a rich genetic variations of hotspots mutations.

Authors:  Meriem Laamarti; Tarek Alouane; Souad Kartti; M W Chemao-Elfihri; Mohammed Hakmi; Abdelomunim Essabbar; Mohamed Laamarti; Haitam Hlali; Houda Bendani; Nassma Boumajdi; Oussama Benhrif; Loubna Allam; Naima El Hafidi; Rachid El Jaoudi; Imane Allali; Nabila Marchoudi; Jamal Fekkak; Houda Benrahma; Chakib Nejjari; Saaid Amzazi; Lahcen Belyamani; Azeddine Ibrahimi
Journal:  PLoS One       Date:  2020-11-10       Impact factor: 3.240
  9 in total

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