Literature DB >> 33735276

Application of a bioinformatics training delivery method for reaching dispersed and distant trainees.

Christina R Hall1,2,3, Philippa C Griffin1,2,3, Andrew J Lonie1,2,3, Jeffrey H Christiansen1,2,4,5.   

Abstract

Many initiatives have addressed the global need to upskill biologists in bioinformatics tools and techniques. Australia is not unique in its requirement for such training, but due to its large size and relatively small and geographically dispersed population, Australia faces specific challenges. A combined training approach was implemented by the authors to overcome these challenges. The "hybrid" method combines guidance from experienced trainers with the benefits of both webinar-style delivery and concurrent face-to-face hands-on practical exercises in classrooms. Since 2017, the hybrid method has been used to conduct 9 hands-on bioinformatics training sessions at international scale in which over 800 researchers have been trained in diverse topics on a range of software platforms. The method has become a key tool to ensure scalable and more equitable delivery of short-course bioinformatics training across Australia and can be easily adapted to other locations, topics, or settings.

Entities:  

Year:  2021        PMID: 33735276      PMCID: PMC7971692          DOI: 10.1371/journal.pcbi.1008715

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  15 in total

1.  Community-Driven Data Analysis Training for Biology.

Authors:  Bérénice Batut; Saskia Hiltemann; Andrea Bagnacani; Dannon Baker; Vivek Bhardwaj; Clemens Blank; Anthony Bretaudeau; Loraine Brillet-Guéguen; Martin Čech; John Chilton; Dave Clements; Olivia Doppelt-Azeroual; Anika Erxleben; Mallory Ann Freeberg; Simon Gladman; Youri Hoogstrate; Hans-Rudolf Hotz; Torsten Houwaart; Pratik Jagtap; Delphine Larivière; Gildas Le Corguillé; Thomas Manke; Fabien Mareuil; Fidel Ramírez; Devon Ryan; Florian Christoph Sigloch; Nicola Soranzo; Joachim Wolff; Pavankumar Videm; Markus Wolfien; Aisanjiang Wubuli; Dilmurat Yusuf; James Taylor; Rolf Backofen; Anton Nekrutenko; Björn Grüning
Journal:  Cell Syst       Date:  2018-06-27       Impact factor: 10.304

2.  Database resources of the National Center for Biotechnology Information.

Authors:  Eric W Sayers; Jeffrey Beck; Evan E Bolton; Devon Bourexis; James R Brister; Kathi Canese; Donald C Comeau; Kathryn Funk; Sunghwan Kim; William Klimke; Aron Marchler-Bauer; Melissa Landrum; Stacy Lathrop; Zhiyong Lu; Thomas L Madden; Nuala O'Leary; Lon Phan; Sanjida H Rangwala; Valerie A Schneider; Yuri Skripchenko; Jiyao Wang; Jian Ye; Barton W Trawick; Kim D Pruitt; Stephen T Sherry
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

3.  Next-generation sequencing: a challenge to meet the increasing demand for training workshops in Australia.

Authors:  Nathan S Watson-Haigh; Catherine A Shang; Matthias Haimel; Myrto Kostadima; Remco Loos; Nandan Deshpande; Konsta Duesing; Xi Li; Annette McGrath; Sean McWilliam; Simon Michnowicz; Paula Moolhuijzen; Steve Quenette; Jerico Nico De Leon Revote; Sonika Tyagi; Maria V Schneider
Journal:  Brief Bioinform       Date:  2013-03-29       Impact factor: 11.622

4.  Unmet needs for analyzing biological big data: A survey of 704 NSF principal investigators.

Authors:  Lindsay Barone; Jason Williams; David Micklos
Journal:  PLoS Comput Biol       Date:  2017-10-19       Impact factor: 4.475

5.  Development of a cloud-based Bioinformatics Training Platform.

Authors:  Jerico Revote; Nathan S Watson-Haigh; Steve Quenette; Blair Bethwaite; Annette McGrath; Catherine A Shang
Journal:  Brief Bioinform       Date:  2017-05-01       Impact factor: 11.622

6.  Ten simple rules for delivering live distance training in bioinformatics across the globe using webinars.

Authors:  Denise Carvalho-Silva; Leyla Garcia; Sarah L Morgan; Cath Brooksbank; Ian Dunham
Journal:  PLoS Comput Biol       Date:  2018-11-15       Impact factor: 4.475

7.  Apollo: Democratizing genome annotation.

Authors:  Nathan A Dunn; Deepak R Unni; Colin Diesh; Monica Munoz-Torres; Nomi L Harris; Eric Yao; Helena Rasche; Ian H Holmes; Christine G Elsik; Suzanna E Lewis
Journal:  PLoS Comput Biol       Date:  2019-02-06       Impact factor: 4.475

8.  From trainees to trainers to instructors: Sustainably building a national capacity in bioinformatics training.

Authors:  Annette McGrath; Katherine Champ; Catherine A Shang; Ellen van Dam; Cath Brooksbank; Sarah L Morgan
Journal:  PLoS Comput Biol       Date:  2019-06-27       Impact factor: 4.475

9.  H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa.

Authors:  Nicola J Mulder; Ezekiel Adebiyi; Raouf Alami; Alia Benkahla; James Brandful; Seydou Doumbia; Dean Everett; Faisal M Fadlelmola; Fatima Gaboun; Simani Gaseitsiwe; Hassan Ghazal; Scott Hazelhurst; Winston Hide; Azeddine Ibrahimi; Yasmina Jaufeerally Fakim; C Victor Jongeneel; Fourie Joubert; Samar Kassim; Jonathan Kayondo; Judit Kumuthini; Sylvester Lyantagaye; Julie Makani; Ahmed Mansour Alzohairy; Daniel Masiga; Ahmed Moussa; Oyekanmi Nash; Odile Ouwe Missi Oukem-Boyer; Ellis Owusu-Dabo; Sumir Panji; Hugh Patterton; Fouzia Radouani; Khalid Sadki; Fouad Seghrouchni; Özlem Tastan Bishop; Nicki Tiffin; Nzovu Ulenga
Journal:  Genome Res       Date:  2015-12-01       Impact factor: 9.438

10.  Building a local community of practice in scientific programming for life scientists.

Authors:  Sarah L R Stevens; Mateusz Kuzak; Carlos Martinez; Aurelia Moser; Petra Bleeker; Marc Galland
Journal:  PLoS Biol       Date:  2018-11-28       Impact factor: 8.029

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