Literature DB >> 33733124

An Introductory Review of Deep Learning for Prediction Models With Big Data.

Frank Emmert-Streib1,2, Zhen Yang1, Han Feng1,3, Shailesh Tripathi1,3, Matthias Dehmer3,4,5.   

Abstract

Deep learning models stand for a new learning paradigm in artificial intelligence (AI) and machine learning. Recent breakthrough results in image analysis and speech recognition have generated a massive interest in this field because also applications in many other domains providing big data seem possible. On a downside, the mathematical and computational methodology underlying deep learning models is very challenging, especially for interdisciplinary scientists. For this reason, we present in this paper an introductory review of deep learning approaches including Deep Feedforward Neural Networks (D-FFNN), Convolutional Neural Networks (CNNs), Deep Belief Networks (DBNs), Autoencoders (AEs), and Long Short-Term Memory (LSTM) networks. These models form the major core architectures of deep learning models currently used and should belong in any data scientist's toolbox. Importantly, those core architectural building blocks can be composed flexibly-in an almost Lego-like manner-to build new application-specific network architectures. Hence, a basic understanding of these network architectures is important to be prepared for future developments in AI.
Copyright © 2020 Emmert-Streib, Yang, Feng, Tripathi and Dehmer.

Entities:  

Keywords:  artificial intelligence; data science; deep learning; machine learning; neural networks; prediction models

Year:  2020        PMID: 33733124      PMCID: PMC7861305          DOI: 10.3389/frai.2020.00004

Source DB:  PubMed          Journal:  Front Artif Intell        ISSN: 2624-8212


  33 in total

1.  Learning to forget: continual prediction with LSTM.

Authors:  F A Gers; J Schmidhuber; F Cummins
Journal:  Neural Comput       Date:  2000-10       Impact factor: 2.026

2.  Framewise phoneme classification with bidirectional LSTM and other neural network architectures.

Authors:  Alex Graves; Jürgen Schmidhuber
Journal:  Neural Netw       Date:  2005 Jun-Jul

3.  A fast learning algorithm for deep belief nets.

Authors:  Geoffrey E Hinton; Simon Osindero; Yee-Whye Teh
Journal:  Neural Comput       Date:  2006-07       Impact factor: 2.026

4.  Long short-term memory.

Authors:  S Hochreiter; J Schmidhuber
Journal:  Neural Comput       Date:  1997-11-15       Impact factor: 2.026

Review 5.  Deep learning.

Authors:  Yann LeCun; Yoshua Bengio; Geoffrey Hinton
Journal:  Nature       Date:  2015-05-28       Impact factor: 49.962

6.  Deep Convolutional Neural Networks for Image Classification: A Comprehensive Review.

Authors:  Waseem Rawat; Zenghui Wang
Journal:  Neural Comput       Date:  2017-06-09       Impact factor: 2.026

Review 7.  Deep Learning in Medical Image Analysis.

Authors:  Dinggang Shen; Guorong Wu; Heung-Il Suk
Journal:  Annu Rev Biomed Eng       Date:  2017-03-09       Impact factor: 9.590

8.  Large-scale comparison of machine learning methods for drug target prediction on ChEMBL.

Authors:  Andreas Mayr; Günter Klambauer; Thomas Unterthiner; Marvin Steijaert; Jörg K Wegner; Hugo Ceulemans; Djork-Arné Clevert; Sepp Hochreiter
Journal:  Chem Sci       Date:  2018-06-06       Impact factor: 9.825

9.  Deep learning of the tissue-regulated splicing code.

Authors:  Michael K K Leung; Hui Yuan Xiong; Leo J Lee; Brendan J Frey
Journal:  Bioinformatics       Date:  2014-06-15       Impact factor: 6.937

10.  An Oscillatory Neural Autoencoder Based on Frequency Modulation and Multiplexing.

Authors:  Karthik Soman; Vignesh Muralidharan; V Srinivasa Chakravarthy
Journal:  Front Comput Neurosci       Date:  2018-07-10       Impact factor: 2.380

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  29 in total

1.  Deep learning-a first meta-survey of selected reviews across scientific disciplines, their commonalities, challenges and research impact.

Authors:  Jan Egger; Antonio Pepe; Christina Gsaxner; Yuan Jin; Jianning Li; Roman Kern
Journal:  PeerJ Comput Sci       Date:  2021-11-17

2.  STALLION: a stacking-based ensemble learning framework for prokaryotic lysine acetylation site prediction.

Authors:  Shaherin Basith; Gwang Lee; Balachandran Manavalan
Journal:  Brief Bioinform       Date:  2022-01-17       Impact factor: 11.622

3.  A systematic review and Meta-data analysis on the applications of Deep Learning in Electrocardiogram.

Authors:  Nehemiah Musa; Abdulsalam Ya'u Gital; Nahla Aljojo; Haruna Chiroma; Kayode S Adewole; Hammed A Mojeed; Nasir Faruk; Abubakar Abdulkarim; Ifada Emmanuel; Yusuf Y Folawiyo; James A Ogunmodede; Abdukareem A Oloyede; Lukman A Olawoyin; Ismaeel A Sikiru; Ibrahim Katb
Journal:  J Ambient Intell Humaniz Comput       Date:  2022-07-07

4.  Machine-Learned Molecular Surface and Its Application to Implicit Solvent Simulations.

Authors:  Haixin Wei; Zekai Zhao; Ray Luo
Journal:  J Chem Theory Comput       Date:  2021-09-13       Impact factor: 6.578

5.  A deep learning approach for Spatio-Temporal forecasting of new cases and new hospital admissions of COVID-19 spread in Reggio Emilia, Northern Italy.

Authors:  Veronica Sciannameo; Alessia Goffi; Giuseppe Maffeis; Roberta Gianfreda; Daniele Jahier Pagliari; Tommaso Filippini; Pamela Mancuso; Paolo Giorgi-Rossi; Leonardo Alberto Dal Zovo; Angela Corbari; Marco Vinceti; Paola Berchialla
Journal:  J Biomed Inform       Date:  2022-07-11       Impact factor: 8.000

Review 6.  Photoacoustic imaging aided with deep learning: a review.

Authors:  Praveenbalaji Rajendran; Arunima Sharma; Manojit Pramanik
Journal:  Biomed Eng Lett       Date:  2021-11-23

7.  Enabling data-limited chemical bioactivity predictions through deep neural network transfer learning.

Authors:  Ruifeng Liu; Srinivas Laxminarayan; Jaques Reifman; Anders Wallqvist
Journal:  J Comput Aided Mol Des       Date:  2022-10-22       Impact factor: 4.179

8.  Data-Driven Computational Social Network Science: Predictive and Inferential Models for Web-Enabled Scientific Discoveries.

Authors:  Frank Emmert-Streib; Matthias Dehmer
Journal:  Front Big Data       Date:  2021-04-22

Review 9.  Function of Circular RNAs in Fish and Their Potential Application as Biomarkers.

Authors:  Golam Rbbani; Artem Nedoluzhko; Jorge Galindo-Villegas; Jorge M O Fernandes
Journal:  Int J Mol Sci       Date:  2021-07-01       Impact factor: 5.923

Review 10.  The Trifecta of Single-Cell, Systems-Biology, and Machine-Learning Approaches.

Authors:  Taylor M Weiskittel; Cristina Correia; Grace T Yu; Choong Yong Ung; Scott H Kaufmann; Daniel D Billadeau; Hu Li
Journal:  Genes (Basel)       Date:  2021-07-20       Impact factor: 4.141

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