Literature DB >> 33732232

Lymphoma Heterogeneity Unraveled by Single-Cell Transcriptomics.

Loic Ysebaert1,2,3,4,5,6,7, Anne Quillet-Mary1,2,3,4,5,6, Marie Tosolini1,2,3,4,5,6, Frederic Pont1,6, Camille Laurent1,2,3,4,5,6,8, Jean-Jacques Fournié1,2,3,4,5,6.   

Abstract

High-definition transcriptomic studies through single-cell RNA sequencing (scRNA-Seq) have revealed the heterogeneity and functionality of the various microenvironments across numerous solid tumors. Those pioneer studies have highlighted different cellular signatures correlated with clinical response to immune checkpoint inhibitors. scRNA-Seq offers also a unique opportunity to unravel the intimate heterogeneity of the ecosystems across different lymphoma entities. In this review, we will first cover the basics and future developments of the technology, and we will discuss its input in the field of translational lymphoma research, from determination of cell-of-origin and functional diversity, to monitoring of anti-cancer targeted drugs response and toxicities, and how new improvements in both data collection and interpretation will further foster precision medicine in the upcoming years.
Copyright © 2021 Ysebaert, Quillet-Mary, Tosolini, Pont, Laurent and Fournié.

Entities:  

Keywords:  bioinformatics analysis; cell of origin (COO); lymphoma; microenvironment; single-cell RNA sequencing (scRNA-seq)

Year:  2021        PMID: 33732232      PMCID: PMC7959738          DOI: 10.3389/fimmu.2021.597651

Source DB:  PubMed          Journal:  Front Immunol        ISSN: 1664-3224            Impact factor:   7.561


  74 in total

1.  Prediction of survival in diffuse large B-cell lymphoma based on the expression of 2 genes reflecting tumor and microenvironment.

Authors:  Ash A Alizadeh; Andrew J Gentles; Alvaro J Alencar; Chih Long Liu; Holbrook E Kohrt; Roch Houot; Matthew J Goldstein; Shuchun Zhao; Yasodha Natkunam; Ranjana H Advani; Randy D Gascoyne; Javier Briones; Robert J Tibshirani; June H Myklebust; Sylvia K Plevritis; Izidore S Lossos; Ronald Levy
Journal:  Blood       Date:  2011-06-13       Impact factor: 22.113

2.  Immunology in the Era of Single-Cell Technologies.

Authors:  Mirjana Efremova; Roser Vento-Tormo; Jong-Eun Park; Sarah A Teichmann; Kylie R James
Journal:  Annu Rev Immunol       Date:  2020-02-19       Impact factor: 28.527

3.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

4.  Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq.

Authors:  Itay Tirosh; Benjamin Izar; Sanjay M Prakadan; Marc H Wadsworth; Daniel Treacy; John J Trombetta; Asaf Rotem; Christopher Rodman; Christine Lian; George Murphy; Mohammad Fallahi-Sichani; Ken Dutton-Regester; Jia-Ren Lin; Ofir Cohen; Parin Shah; Diana Lu; Alex S Genshaft; Travis K Hughes; Carly G K Ziegler; Samuel W Kazer; Aleth Gaillard; Kellie E Kolb; Alexandra-Chloé Villani; Cory M Johannessen; Aleksandr Y Andreev; Eliezer M Van Allen; Monica Bertagnolli; Peter K Sorger; Ryan J Sullivan; Keith T Flaherty; Dennie T Frederick; Judit Jané-Valbuena; Charles H Yoon; Orit Rozenblatt-Rosen; Alex K Shalek; Aviv Regev; Levi A Garraway
Journal:  Science       Date:  2016-04-08       Impact factor: 47.728

5.  Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies.

Authors:  Kevin R Parker; Denis Migliorini; Eric Perkey; Kathryn E Yost; Aparna Bhaduri; Puneet Bagga; Mohammad Haris; Neil E Wilson; Fang Liu; Khatuna Gabunia; John Scholler; Thomas J Montine; Vijay G Bhoj; Ravinder Reddy; Suyash Mohan; Ivan Maillard; Arnold R Kriegstein; Carl H June; Howard Y Chang; Avery D Posey; Ansuman T Satpathy
Journal:  Cell       Date:  2020-09-21       Impact factor: 41.582

6.  Toward understanding and exploiting tumor heterogeneity.

Authors:  Ash A Alizadeh; Victoria Aranda; Alberto Bardelli; Cedric Blanpain; Christoph Bock; Christine Borowski; Carlos Caldas; Andrea Califano; Michael Doherty; Markus Elsner; Manel Esteller; Rebecca Fitzgerald; Jan O Korbel; Peter Lichter; Christopher E Mason; Nicholas Navin; Dana Pe'er; Kornelia Polyak; Charles W M Roberts; Lillian Siu; Alexandra Snyder; Hannah Stower; Charles Swanton; Roel G W Verhaak; Jean C Zenklusen; Johannes Zuber; Jessica Zucman-Rossi
Journal:  Nat Med       Date:  2015-08       Impact factor: 53.440

7.  A draft network of ligand-receptor-mediated multicellular signalling in human.

Authors:  Jordan A Ramilowski; Tatyana Goldberg; Jayson Harshbarger; Edda Kloppmann; Edda Kloppman; Marina Lizio; Venkata P Satagopam; Masayoshi Itoh; Hideya Kawaji; Piero Carninci; Burkhard Rost; Alistair R R Forrest
Journal:  Nat Commun       Date:  2015-07-22       Impact factor: 14.919

8.  Single-cell analysis of germinal-center B cells informs on lymphoma cell of origin and outcome.

Authors:  Antony B Holmes; Clarissa Corinaldesi; Qiong Shen; Rahul Kumar; Nicolo Compagno; Zhong Wang; Mor Nitzan; Eli Grunstein; Laura Pasqualucci; Riccardo Dalla-Favera; Katia Basso
Journal:  J Exp Med       Date:  2020-10-05       Impact factor: 14.307

9.  Characteristics of anti-CD19 CAR T cell infusion products associated with efficacy and toxicity in patients with large B cell lymphomas.

Authors:  Qing Deng; Guangchun Han; Nahum Puebla-Osorio; Man Chun John Ma; Paolo Strati; Beth Chasen; Enyu Dai; Minghao Dang; Neeraj Jain; Haopeng Yang; Yuanxin Wang; Shaojun Zhang; Ruiping Wang; Runzhe Chen; Jordan Showell; Sreejoyee Ghosh; Sridevi Patchva; Qi Zhang; Ryan Sun; Frederick Hagemeister; Luis Fayad; Felipe Samaniego; Hans C Lee; Loretta J Nastoupil; Nathan Fowler; R Eric Davis; Jason Westin; Sattva S Neelapu; Linghua Wang; Michael R Green
Journal:  Nat Med       Date:  2020-10-05       Impact factor: 87.241

10.  RNA velocity of single cells.

Authors:  Gioele La Manno; Ruslan Soldatov; Amit Zeisel; Emelie Braun; Hannah Hochgerner; Viktor Petukhov; Katja Lidschreiber; Maria E Kastriti; Peter Lönnerberg; Alessandro Furlan; Jean Fan; Lars E Borm; Zehua Liu; David van Bruggen; Jimin Guo; Xiaoling He; Roger Barker; Erik Sundström; Gonçalo Castelo-Branco; Patrick Cramer; Igor Adameyko; Sten Linnarsson; Peter V Kharchenko
Journal:  Nature       Date:  2018-08-08       Impact factor: 49.962

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  2 in total

Review 1.  Sphingolipids and Lymphomas: A Double-Edged Sword.

Authors:  Alfredo Pherez-Farah; Rosa Del Carmen López-Sánchez; Luis Mario Villela-Martínez; Rocío Ortiz-López; Brady E Beltrán; José Ascención Hernández-Hernández
Journal:  Cancers (Basel)       Date:  2022-04-19       Impact factor: 6.575

2.  Editorial: New Insights Into the Complexity of Tumor Immunology in B-Cell Malignancies: Disease Biology and Signaling.

Authors:  Jérôme Paggetti; Martina Seiffert; Etienne Moussay
Journal:  Front Oncol       Date:  2021-12-15       Impact factor: 6.244

  2 in total

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