Literature DB >> 33728361

Molecular storytelling for online structural biology outreach and education.

David S Goodsell, Shuchismita Dutta, Maria Voigt1, Christine Zardecki1.   

Abstract

Knowledge about the structure and function of biomolecules continues to grow exponentially, enabling us to "see" structural snapshots of biomolecular interactions and functional assemblies. At PDB-101, the educational portal of the RCSB Protein Data Bank, we have taken a storytelling approach to make this body of knowledge accessible and comprehensible to a wide community of students, educators, and the general public. For over 20 years, the Molecule of the Month series has utilized a traditional illustrated storytelling approach that is regularly adapted for classroom instruction. Similar visual and interactive storytelling approaches are used to present topical subjects at PDB-101 and full curricular materials and case studies for building a detailed narrative around topics of particular interest. This emphasis on storytelling led to the Video Challenge for High School students, now in its 8th year. In this Article, we will present some of the lessons we have learned for teaching and communicating structural biology using the PDB archive of biomolecular structures.
© 2021 Author(s).

Year:  2021        PMID: 33728361      PMCID: PMC7936881          DOI: 10.1063/4.0000077

Source DB:  PubMed          Journal:  Struct Dyn        ISSN: 2329-7778            Impact factor:   2.920


  10 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  RCSB Protein Data Bank: Enabling biomedical research and drug discovery.

Authors:  David S Goodsell; Christine Zardecki; Luigi Di Costanzo; Jose M Duarte; Brian P Hudson; Irina Persikova; Joan Segura; Chenghua Shao; Maria Voigt; John D Westbrook; Jasmine Y Young; Stephen K Burley
Journal:  Protein Sci       Date:  2019-11-29       Impact factor: 6.725

3.  Illustrate: Software for Biomolecular Illustration.

Authors:  David S Goodsell; Ludovic Autin; Arthur J Olson
Journal:  Structure       Date:  2019-09-10       Impact factor: 5.006

Review 4.  Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive.

Authors:  Stephen K Burley; Helen M Berman; Gerard J Kleywegt; John L Markley; Haruki Nakamura; Sameer Velankar
Journal:  Methods Mol Biol       Date:  2017

5.  GenBank.

Authors:  Eric W Sayers; Mark Cavanaugh; Karen Clark; James Ostell; Kim D Pruitt; Ilene Karsch-Mizrachi
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

6.  The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology.

Authors:  David S Goodsell; Shuchismita Dutta; Christine Zardecki; Maria Voigt; Helen M Berman; Stephen K Burley
Journal:  PLoS Biol       Date:  2015-05-05       Impact factor: 8.029

7.  Database resources of the National Center for Biotechnology Information.

Authors: 
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

8.  UniProt: a worldwide hub of protein knowledge.

Authors: 
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

9.  Insights from 20 years of the Molecule of the Month.

Authors:  David S Goodsell; Christine Zardecki; Helen M Berman; Stephen K Burley
Journal:  Biochem Mol Biol Educ       Date:  2020-06-17       Impact factor: 1.160

10.  RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.

Authors:  Stephen K Burley; Charmi Bhikadiya; Chunxiao Bi; Sebastian Bittrich; Li Chen; Gregg V Crichlow; Cole H Christie; Kenneth Dalenberg; Luigi Di Costanzo; Jose M Duarte; Shuchismita Dutta; Zukang Feng; Sai Ganesan; David S Goodsell; Sutapa Ghosh; Rachel Kramer Green; Vladimir Guranović; Dmytro Guzenko; Brian P Hudson; Catherine L Lawson; Yuhe Liang; Robert Lowe; Harry Namkoong; Ezra Peisach; Irina Persikova; Chris Randle; Alexander Rose; Yana Rose; Andrej Sali; Joan Segura; Monica Sekharan; Chenghua Shao; Yi-Ping Tao; Maria Voigt; John D Westbrook; Jasmine Y Young; Christine Zardecki; Marina Zhuravleva
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

  10 in total
  2 in total

1.  Transactions from the 70th Annual Meeting of the American Crystallographic Association: Structural Science-New Ways to Teach the Next Generation.

Authors:  Joseph Tanski; Christine Zardecki; Andrey Yakovenko; Cassandra Eagle
Journal:  Struct Dyn       Date:  2021-07-20       Impact factor: 2.920

2.  PDB-101: Educational resources supporting molecular explorations through biology and medicine.

Authors:  Christine Zardecki; Shuchismita Dutta; David S Goodsell; Robert Lowe; Maria Voigt; Stephen K Burley
Journal:  Protein Sci       Date:  2021-10-18       Impact factor: 6.725

  2 in total

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