Literature DB >> 33727697

Genetic differences between benign phyllodes tumors and fibroadenomas revealed through targeted next generation sequencing.

Cedric Chuan Young Ng1, Nur Diyana Md Nasir2, Benjamin Nathanael Loke2,3,4, Timothy Kwang Yong Tay2, Aye Aye Thike2,3, Vikneswari Rajasegaran1, Wei Liu1, Jing Yi Lee1, Peiyong Guan1,5, Abner Herbert Lim1, Kenneth Tou En Chang6, Mihir Ananta Gudi6, Preetha Madhukumar7,8, Benita Kiat Tee Tan7,8,9, Veronique Kiak Mien Tan7,8, Chow Yin Wong7,8, Wei Sean Yong7,8, Gay Hui Ho7, Kong Wee Ong7, George Wai Cheong Yip4, Boon Huat Bay4, Patrick Tan3, Bin Tean Teh10,11, Puay Hoon Tan12,13,14,15.   

Abstract

Breast fibroepithelial lesions are biphasic tumors which comprise the common benign fibroadenomas (FAs) and the rarer phyllodes tumors (PTs). This study analyzed 262 (42%) conventional FAs, 45 (7%) cellular FAs, and 321 (51%) benign PTs contributed by the International Fibroepithelial Consortium, using a previously curated 16 gene panel. Benign PTs were found to possess a higher number of mutations, and higher rates of cancer driver gene alterations than both groups of FAs, in particular MED12, TERT promoter, RARA, FLNA, SETD2, RB1, and EGFR. Cases with MED12 mutations were also more likely to have TERT promoter, RARA, SETD2, and EGFR. There were no significant differences detected between conventional FAs and cellular FAs, except for PIK3CA and MAP3K1. TERT promoter alterations were most optimal in discriminating between FAs and benign PTs. Our study affirms the role of sequencing and key mutations that may assist in refining diagnoses of these lesions.

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Year:  2021        PMID: 33727697     DOI: 10.1038/s41379-021-00787-w

Source DB:  PubMed          Journal:  Mod Pathol        ISSN: 0893-3952            Impact factor:   7.842


  84 in total

1.  Mutational analysis of MED12 in fibroadenomas and phyllodes tumors of the breast by means of targeted next-generation sequencing.

Authors:  Chieko Mishima; Naofumi Kagara; Tomonori Tanei; Yasuto Naoi; Masafumi Shimoda; Atsushi Shimomura; Kenzo Shimazu; Seung Jin Kim; Shinzaburo Noguchi
Journal:  Breast Cancer Res Treat       Date:  2015-06-21       Impact factor: 4.872

2.  Comprehensive genomic profiling of malignant phyllodes tumors of the breast.

Authors:  Sahar Nozad; Christine E Sheehan; Laurie M Gay; Julia A Elvin; Jo-Anne Vergilio; James Suh; Shakti Ramkissoon; Alexa B Schrock; Kim M Hirshfield; Nadia Ali; Shridar Ganesan; Siraj M Ali; Vincent A Miller; Philip J Stephens; Jeffrey S Ross; Jon H Chung
Journal:  Breast Cancer Res Treat       Date:  2017-02-17       Impact factor: 4.872

3.  MED12 somatic mutations in fibroadenomas and phyllodes tumours of the breast.

Authors:  Salvatore Piscuoglio; Melissa Murray; Nicola Fusco; Caterina Marchiò; Florence L Loo; Luciano G Martelotto; Anne M Schultheis; Muzaffar Akram; Britta Weigelt; Edi Brogi; Jorge S Reis-Filho
Journal:  Histopathology       Date:  2015-05-24       Impact factor: 5.087

4.  Genomic landscapes of breast fibroepithelial tumors.

Authors:  Jing Tan; Choon Kiat Ong; Weng Khong Lim; Cedric Chuan Young Ng; Aye Aye Thike; Ley Moy Ng; Vikneswari Rajasegaran; Swe Swe Myint; Sanjanaa Nagarajan; Saranya Thangaraju; Sucharita Dey; Nur Diyana Md Nasir; Giovani Claresta Wijaya; Jing Quan Lim; Dachuan Huang; Zhimei Li; Bernice Huimin Wong; Jason Yong Sheng Chan; John R McPherson; Ioana Cutcutache; Gregory Poore; Su Ting Tay; Wai Jin Tan; Thomas Choudary Putti; Buhari Shaik Ahmad; Philip Iau; Ching Wan Chan; Anthony P H Tang; Wei Sean Yong; Preetha Madhukumar; Gay Hui Ho; Veronique Kiak Mien Tan; Chow Yin Wong; Mikael Hartman; Kong Wee Ong; Benita K T Tan; Steven G Rozen; Patrick Tan; Puay Hoon Tan; Bin Tean Teh
Journal:  Nat Genet       Date:  2015-10-05       Impact factor: 38.330

5.  Next-Gen Sequencing Exposes Frequent MED12 Mutations and Actionable Therapeutic Targets in Phyllodes Tumors.

Authors:  Andi K Cani; Daniel H Hovelson; Andrew S McDaniel; Seth Sadis; Michaela J Haller; Venkata Yadati; Anmol M Amin; Jarred Bratley; Santhoshi Bandla; Paul D Williams; Kate Rhodes; Chia-Jen Liu; Michael J Quist; Daniel R Rhodes; Catherine S Grasso; Celina G Kleer; Scott A Tomlins
Journal:  Mol Cancer Res       Date:  2015-01-15       Impact factor: 5.852

Review 6.  Fibroepithelial lesions; The WHO spectrum.

Authors:  Gregor Krings; Gregory R Bean; Yunn-Yi Chen
Journal:  Semin Diagn Pathol       Date:  2017-05-28       Impact factor: 3.464

7.  Exome sequencing identifies highly recurrent MED12 somatic mutations in breast fibroadenoma.

Authors:  Weng Khong Lim; Choon Kiat Ong; Jing Tan; Aye Aye Thike; Cedric Chuan Young Ng; Vikneswari Rajasegaran; Swe Swe Myint; Sanjanaa Nagarajan; Nur Diyana Md Nasir; John R McPherson; Ioana Cutcutache; Gregory Poore; Su Ting Tay; Wei Siong Ooi; Veronique Kiak Mien Tan; Mikael Hartman; Kong Wee Ong; Benita K T Tan; Steven G Rozen; Puay Hoon Tan; Patrick Tan; Bin Tean Teh
Journal:  Nat Genet       Date:  2014-07-20       Impact factor: 38.330

8.  Genomic profiling of malignant phyllodes tumors reveals aberrations in FGFR1 and PI-3 kinase/RAS signaling pathways and provides insights into intratumoral heterogeneity.

Authors:  Su-Yang Liu; Nancy M Joseph; Ajay Ravindranathan; Bradley A Stohr; Nancy Y Greenland; Poonam Vohra; Elizabeth Hosfield; Iwei Yeh; Eric Talevich; Courtney Onodera; Jessica A Van Ziffle; James P Grenert; Boris C Bastian; Yunn-Yi Chen; Gregor Krings
Journal:  Mod Pathol       Date:  2016-06-03       Impact factor: 7.842

Review 9.  Genetics and genomics of breast fibroadenomas.

Authors:  Benjamin Nathanael Loke; Nur Diyana Md Nasir; Aye Aye Thike; Jonathan Yu Han Lee; Cheok Soon Lee; Bin Tean Teh; Puay Hoon Tan
Journal:  J Clin Pathol       Date:  2017-12-16       Impact factor: 3.411

10.  Massively parallel sequencing of phyllodes tumours of the breast reveals actionable mutations, and TERT promoter hotspot mutations and TERT gene amplification as likely drivers of progression.

Authors:  Salvatore Piscuoglio; Charlotte Ky Ng; Melissa Murray; Kathleen A Burke; Marcia Edelweiss; Felipe C Geyer; Gabriel S Macedo; Akiko Inagaki; Anastasios D Papanastasiou; Luciano G Martelotto; Caterina Marchio; Raymond S Lim; Rafael A Ioris; Pooja K Nahar; Ino De Bruijn; Lillian Smyth; Muzaffar Akram; Dara Ross; John H Petrini; Larry Norton; David B Solit; Jose Baselga; Edi Brogi; Marc Ladanyi; Britta Weigelt; Jorge S Reis-Filho
Journal:  J Pathol       Date:  2016-01-25       Impact factor: 7.996

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  3 in total

1.  Surgical management and prognosis of phyllodes tumors of the breast.

Authors:  Yashuang Ji; Yuting Zhong; Yiqiong Zheng; Huayu Hu; Ningning Min; Yufan Wei; Rui Geng; Chenyan Hong; Qingyu Guan; Jie Li; Zhili Wang; Yanjun Zhang; Xiru Li
Journal:  Gland Surg       Date:  2022-06

Review 2.  Malignant phyllodes tumor of the breast: a systematic review.

Authors:  Germana Lissidini; Antonino Mulè; Angela Santoro; Giovanni Papa; Luca Nicosia; Enrico Cassano; Arwa Ahmed Ashoor; Paolo Veronesi; Liron Pantanowitz; Jason L Hornick; Esther Diana Rossi
Journal:  Pathologica       Date:  2022-04-13

3.  A comprehensive next generation sequencing tissue assay for Asian-prevalent cancers-Analytical validation and performance evaluation with clinical samples.

Authors:  Cedric Chuan-Young Ng; Sandy Lim; Abner Herbert Lim; Nur Diyana Md Nasir; Jingxian Zhang; Vikneswari Rajasegaran; Jing Yi Lee; Jessica Sook Ting Kok; Aye Aye Thike; Johnathan Xiande Lim; Ruifen Weng; Sidney Yee; Yukti Choudhury; Jason Yongsheng Chan; Puay Hoon Tan; Min-Han Tan; Bin Tean Teh
Journal:  Front Mol Biosci       Date:  2022-09-21
  3 in total

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