Yixin Ren1,2,3, Ying Lian1,2,3, Zhiqiang Yan1,4, Fan Zhai1,3,5, Ming Yang1,6,4, Xiaohui Zhu1,2,3, Yuqian Wang1,2,3, Yanli Nie1,3,5, Shuo Guan1,3,5, Ying Kuo1,2,3, Jin Huang1,3,5, Xiaodan Shi1,3,5, Jialin Jia1,3,5, Jie Qiao1,2,3,6,5,7,8, Liying Yan9,10,11. 1. Center for Reproductive Medicine, Department of Obstetrics and Gynecology, Peking University Third Hospital, No. 49 Hua Yuan Bei Road, Hai Dian District, Beijing, 100191, China. 2. National Clinical Center for Obstetrics and Gynecology, Beijing, China. 3. Key Laboratory of Assisted Reproduction, Ministry of Education, Beijing, China. 4. Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China. 5. Beijing Key Laboratory of Reproductive Endocrinology and Assisted Reproduction, Beijing, China. 6. Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China. 7. Beijing Advanced Innovation Center for Genomics (ICG), Peking University, Beijing, China. 8. Research Units of Comprehensive Diagnosis and Treatment of Oocyte Maturation Arrest, Beijing, China. 9. Center for Reproductive Medicine, Department of Obstetrics and Gynecology, Peking University Third Hospital, No. 49 Hua Yuan Bei Road, Hai Dian District, Beijing, 100191, China. yanliyingkind@aliyun.com. 10. National Clinical Center for Obstetrics and Gynecology, Beijing, China. yanliyingkind@aliyun.com. 11. Key Laboratory of Assisted Reproduction, Ministry of Education, Beijing, China. yanliyingkind@aliyun.com.
Abstract
PURPOSE: To determine whether next-generation sequencing (NGS) could be used to directly detect different mutations of Duchenne muscular dystrophy (DMD) during preimplantation genetic testing (PGT). METHODS: From Sep. 2016 to Aug. 2018, a total of six couples participated in this study. Four cases carried DMD exon deletions and two carried exon duplications. Trophectoderm cells were biopsied at day 5 or 6 and NGS was used in the genetic testing of the biopsied cells after whole-genome amplification. We developed a new method-DIRected Embryonic Cell Testing of Exon Deletion/Duplication (DIRECTED) to directly detect the single-gene mutation by NGS. Linage analysis based on single-nucleotide polymorphism (SNP) was used to validate the results from DIRECTED. RESULTS: In the four deletion cases, DIRECTED was used to detect DMD exon deletion in 16 biopsied embryos. All DIRECTED results were consistent with linkage analysis, indicating this method was reliable in detecting deletions around 1 Mb. In the two cases carrying exon duplications, no blastocyst was obtained for biopsy. Nonetheless, preliminary experiment results suggested that DIRECTED could also be used for direct detection of exon duplications in embryos. CONCLUSIONS: Exon deletions or duplications in DMD of preimplantation embryos could be detected directly by NGS-based methods during PGT.
PURPOSE: To determine whether next-generation sequencing (NGS) could be used to directly detect different mutations of Duchenne muscular dystrophy (DMD) during preimplantation genetic testing (PGT). METHODS: From Sep. 2016 to Aug. 2018, a total of six couples participated in this study. Four cases carried DMD exon deletions and two carried exon duplications. Trophectoderm cells were biopsied at day 5 or 6 and NGS was used in the genetic testing of the biopsied cells after whole-genome amplification. We developed a new method-DIRected Embryonic Cell Testing of Exon Deletion/Duplication (DIRECTED) to directly detect the single-gene mutation by NGS. Linage analysis based on single-nucleotide polymorphism (SNP) was used to validate the results from DIRECTED. RESULTS: In the four deletion cases, DIRECTED was used to detect DMD exon deletion in 16 biopsied embryos. All DIRECTED results were consistent with linkage analysis, indicating this method was reliable in detecting deletions around 1 Mb. In the two cases carrying exon duplications, no blastocyst was obtained for biopsy. Nonetheless, preliminary experiment results suggested that DIRECTED could also be used for direct detection of exon duplications in embryos. CONCLUSIONS: Exon deletions or duplications in DMD of preimplantation embryos could be detected directly by NGS-based methods during PGT.
Authors: Jason M Franasiak; Eric J Forman; Kathleen H Hong; Marie D Werner; Kathleen M Upham; Nathan R Treff; Richard T Scott Journal: Fertil Steril Date: 2013-12-17 Impact factor: 7.329