| Literature DB >> 33708274 |
Mohamed Houseni1, Menna Allah Mahmoud1, Salwa Saad2, Fathi ElHussiny2, Mohammed Shihab2.
Abstract
PURPOSE: The aim of our work is to evaluate the correlation of two-dimensional (2D) and three-dimensional (3D) radiomics and metabolic features of hepatocellular carcinoma (HCC) with tumour diameter, staging, and metabolic tumour volume (MTV).Entities:
Keywords: FDG-PET-CT; hepatocellular carcinoma; heterogeneity; radiomics
Year: 2021 PMID: 33708274 PMCID: PMC7934742 DOI: 10.5114/pjr.2021.103239
Source DB: PubMed Journal: Pol J Radiol ISSN: 1733-134X
Figure 1The workflow of standardised uptake value (SUV) parameters and radiomics features extraction
Figure 2Coronal positron-emission tomography (PET) images of a 59-year-old male with hepatocellular carcinoma before (A) and after (B) delineation of the liver lesion using LIFEx package
Summary of the features included in this study
| Feature name | Feature index | Feature type |
|---|---|---|
| The minimum SUV | SUVmin (SUV) | SUV/normal metabolic parameters |
| The average SUV | SUVmean (SUV) | SUV/normal metabolic parameters |
| The standard deviation of SUV | SUVstd (SUV) | SUV/normal metabolic parameters |
| The maximum SUV | SUVmax (SUV) | SUV/normal metabolic parameters |
| The coefficient of variation | SUV(std/mean) | SUV/normal metabolic parameters |
| Total lesion glycolysis | TLG (ml) | Global metabolic parameters |
| Metabolic tumour volume | (MTV) Volume (ml) | Global metabolic parameters |
| Skewness | HISTO_Skewness | Histogram indices |
| Kurtosis | HISTO_Kurtosis | Histogram indices |
| Entropy | HISTO_Entropy_log10 | Histogram indices |
| Entropy | HISTO_Entropy_log2 | Histogram indices |
| Energy | HISTO_Energy | Histogram indices |
| Homogeneity | GLCM_Homogeneity | The grey level co-occurrence matrix (GLCM) |
| Energy | GLCM_Energy | GLCM |
| Contrast | GLCM_Contrast | GLCM |
| Correlation | GLCM_Correlation | GLCM |
| Entropy | GLCM_Entropy_log10 | GLCM |
| Entropy | GLCM_Entropy_log2 | GLCM |
| Dissimilarity | GLCM_Dissimilarity | GLCM |
| Short-run emphasis | GLRLM_SRE | The grey-level run length matrix (GLRLM) |
| Long-run emphasis | GLRLM_LRE | GLRLM |
| Low grey-level run emphasis | GLRLM_LGRE | GLRLM |
| High grey-level run emphasis | GLRLM_HGRE | GLRLM |
| Short-run low grey-level emphasis | GLRLM_SRLGE | GLRLM |
| Short-run high grey-level emphasis | GLRLM_SRHGE | GLRLM |
| Long-run low grey-level emphasis | GLRLM_LRLGE | GLRLM |
| Long-run high grey-level emphasis | GLRLM_LRHGE | GLRLM |
| Grey-level non-uniformity for run | GLRLM_GLNU | GLRLM |
| Run length non-uniformity | GLRLM_RLNU | GLRLM |
| Run percentage | GLRLM_RP | GLRLM |
| Coarseness | NGLDM_Coarseness | The neighbourhood grey-level different matrix (NGLDM) |
| Contrast | NGLDM_Contrast | NGLDM |
| Busyness | NGLDM_Busyness | NGLDM |
| Short-zone emphasis | GLZLM_SZE | The grey-level zone length matrix (GLZLM) |
| Long-zone emphasis | GLZLM_LZE | GLZLM |
| Low grey-level zone emphasis | GLZLM_LGZE | GLZLM |
| High grey-level zone emphasis | GLZLM_HGZE | GLZLM |
| Short-zone low grey-level emphasis | GLZLM_SZLGE | GLZLM |
| Short-zone high grey-level emphasis | GLZLM_SZHGE | GLZLM |
| Long-zone low grey-level emphasis | GLZLM_LZLGE | GLZLM |
| Long-zone high grey-level emphasis | GLZLM_LZHGE | GLZLM |
| Grey-level non-uniformity for zone | GLZLM_GLNU | GLZLM |
| Zone length non-uniformity | GLZLM_ZLNU | GLZLM |
| Zone percentage | GLZLM_ZP | GLZLM |
Figure 3Show a box plot of metabolic parameters in Siemens vs. LIFEx software. A) Metabolic tumour volume (MTV) in both software. B) A SUVmax and SUVmean in each software
The results of paired t-test for metabolic and radiomics features in both 2D and 3D modes; the cells signed with (*) show the significant difference in features between 3D and 2D
| Features | ||
|---|---|---|
| SUV(std/mean) | 1.377 | 0.1782 |
| SUVmin (SUV) | –5.557 | < 0.0001* |
| SUVmean (SUV) | –0.546 | 0.588 |
| SUVstd (SUV) | 0.767 | 0.4484 |
| SUVmax (SUV) | 1.278 | 0.2104 |
| HISTO_Skewness | 0.550 | 0.5858 |
| HISTO_Kurtosis | 0.697 | 0.4908 |
| HISTO_Entropy_log10 | 1.491 | 0.1458 |
| HISTO_Entropy_log2 | 1.491 | 0.1458 |
| HISTO_Energy | 1.955 | 0.0594 |
| GLCM_Homogeneity | 0.754 | 0.4562 |
| GLCM_Energy | –1.536 | 0.1345 |
| GLCM_Contrast | –0.144 | 0.8861 |
| GLCM_Correlation | 3.594 | 0.0011* |
| GLCM_Entropy_log10 | 2.489 | 0.0182* |
| GLCM_Entropy_log2 | 2.489 | 0.0182* |
| GLCM_Dissimilarity | –0.277 | 0.7833 |
| GLRLM_SRE | –1.099 | 0.2800 |
| GLRLM_LRE | 0.475 | 0.6377 |
| GLRLM_LGRE | –0.742 | 0.4633 |
| GLRLM_HGRE | –0.28 | 0.7816 |
| GLRLM_SRLGE | –0.575 | 0.5691 |
| GLRLM_SRHGE | –0.338 | 0.7372 |
| GLRLM_LRLGE | –0.952 | 0.3485 |
| GLRLM_LRHGE | 0.586 | 0.5620 |
| GLRLM_GLNU | 5.845 | < 0.0001* |
| GLRLM_RLNU | 4.837 | < 0.0001* |
| GLRLM_RP | –0.681 | 0.5007 |
| NGLDM_Coarseness | –10.763 | < 0.001 |
| NGLDM_Contrast | –2.763 | 0.0094* |
| NGLDM_Busyness | 4.705 | < 0.0001* |
| GLZLM_SZE | –11.597 | < 0.0001* |
| GLZLM_LZE | 3.020 | 0.0049* |
| GLZLM_LGZE | –0.225 | 0.8234 |
| GLZLM_HGZE | 0.401 | 0.6908 |
| GLZLM_SZLGE | –1.928 | 0.0628 |
| GLZLM_SZHGE | –1.526 | 0.0628 |
| GLZLM_LZLGE | 2.243 | 0.0319* |
| GLZLM_LZHGE | 3.089 | 0.0041* |
| GLZLM_GLNU | 4.430 | 0.0001* |
| GLZLM_ZLNU | 2.586 | 0.0145* |
| GLZLM_ZP | –12.754 | < 0.0001* |
Spearman correlation coefficient rs and ρ-values for metabolic and radiomics features in 3D mode with tumour metabolic volume, tumour staging, and maximum diameter; cells signed with (*) are medium correlation where cells signed with (**) are high correlation
| 3D features | Diameter (rs) | Diameter ( | AJCC staging (rs) | AJCC staging ( | MTV (rs) | MTV (ρ) |
|---|---|---|---|---|---|---|
| SUVmean/std | 0.5019 | 0.0029** | 0.3242 | 0.0657* | 0.6090 | 0.0002** |
| SUVmin (SUV) | –0.5439 | 0.0011** | –0.2844 | 0.1087 | –0.5505 | 0.0009** |
| SUVmean (SUV) | 0.3246 | 0.0654* | 0.4177 | 0.0156* | 0.5114 | 0.0024** |
| _SUVstd (SUV) | 0.4400 | 0.0104* | 0.3509 | 0.0453* | 0.6123 | 0.0002** |
| SUVmax (SUV) | 0.4882 | 0.0040* | 0.4108 | 0.0176* | 0.6928 | < 0.0001** |
| SUVpeak 1 ml | 0.4903 | 0.0038 | 0.3799 | 0.0292* | 0.6801 | < 0.0001** |
| TLG (ml) | 0.7461 | < 0.0001** | 0.4556 | 0.0077* | 0.9776 | < 0.0001** |
| HISTO_Skewness | 0.3281 | 0.0623* | 0.1334 | 0.4592 | 0.4679 | 0.006* |
| HISTO_Kurtosis | 0.2966 | 0.0937 | –0.0407 | 0.8222 | 0.3382 | 0.0542* |
| HISTO_Entropy_log10 | 0.4500 | 0.0086* | 0.3554 | 0.0424* | 0.6230 | 0.0001** |
| HISTO_Energy | –0.4323 | 0.0120* | –0.3452 | 0.0491* | –0.5946 | 0.0003** |
| Sphericity (only for 3D ROI) | –0.2573 | 0.1483 | –0.4117 | 0.0173* | –0.5003 | 0.0030** |
| SHAPE_Compacity ROI (nZ > 1) | 0.7363 | < 0.0001** | 0.3128 | 0.0764* | 0.9542 | < 0.0001** |
| GLCM_Homogeneity | –0.2991 | 0.0908 | –0.3118 | 0.0773* | –0.4602 | 0.007* |
| GLCM_Energy | –0.4090 | 0.0181* | –0.3576 | 0.041* | –0.5872 | 0.0003** |
| GLCM_Contrast | 0.3269 | 0.0633* | 0.3358 | 0.0561* | 0.4773 | 0.0050* |
| GLCM_Correlation | 0.6277 | < 0.0001** | 0.2483 | 0.1635 | 0.7614 | < 0.0001** |
| GLCM_Entropy_log10 | 0.4323 | 0.0120* | 0.3805 | 0.0289* | 0.6096 | 0.0002** |
| GLCM_Dissimilarity | 0.3145 | 0.0746* | 0.3340 | 0.0575* | 0.4766 | 0.0050* |
| GLRLM_SRE | 0.1169 | 0.5190 | 0.2701 | 0.1285 | 0.2012 | 0.2615 |
| GLRLM_LRE | –0.0875 | 0.6283 | –0.2556 | 0.1511 | –0.1310 | 0.4674 |
| GLRLM_LGRE | –0.1273 | 0.4802 | –0.2668 | 0.1333 | –0.2707 | 0.1276 |
| GLRLM_HGRE | 0.3460 | 0.0486* | 0.4115 | 0.0174* | 0.5394 | 0.0012** |
| GLRLM_SRLGE | –0.1521 | 0.3982 | –0.324 | 0.0658* | –0.3185 | 0.0708* |
| GLRLM_SRHGE | 0.3314 | 0.0596* | 0.4218 | 0.0145* | 0.5124 | 0.0023** |
| GLRLM_LRLGE | –0.0087 | 0.9617 | –0.1133 | 0.5303 | –0.0745 | 0.6802 |
| GLRLM_LRHGE | 0.3883 | 0.0256* | 0.4538 | 0.0080* | 0.6380 | < 0.0001** |
| GLRLM_GLNU | 0.6943 | < 0.0001** | 0.2672 | 0.1328 | 0.8930 | < 0.0001** |
| GLRLM_RLNU | 0.7143 | < 0.0001** | 0.4324 | 0.0120* | 0.9733 | < 0.0001** |
| GLRLM_RP | 0.1074 | 0.5519 | 0.2334 | 0.1911 | 0.1852 | 0.3023 |
| NGLDM_Coarseness | –0.711 | < 0.0001** | –0.3993 | 0.0213* | –0.9652 | < 0.0001** |
| NGLDM_Contrast | –0.0054 | 0.9764 | 0.181 | 0.3135 | 0.0896 | 0.6201 |
| NGLDM_Busyness | 0.3197 | 0.0697* | 0.0937 | 0.6041 | 0.4676 | 0.0061* |
| GLZLM_SZE | 0.3018 | 0.0878* | 0.46 | 0.0071* | 0.3061 | 0.0831* |
| GLZLM_LZE | 0.1057 | 0.5581 | –0.1296 | 0.4722 | 0.1407 | 0.4348 |
| GLZLM_LGZE | –0.311 | 0.0781* | –0.4422 | 0.0100* | –0.5043 | 0.0028** |
| GLZLM_HGZE | 0.4122 | 0.0171* | 0.4149 | 0.0163* | 0.6243 | 0.0001** |
| GLZLM_SZLGE | –0.3756 | 0.0312* | –0.3683 | 0.0350* | –0.6233 | 0.0001** |
| GLZLM_SZHGE | 0.4042 | 0.0197* | 0.4110 | 0.0175* | 0.5929 | 0.0003** |
| GLZLM_LZLGE | 0.1910 | 0.2869 | –0.0546 | 0.7627 | 0.2176 | 0.2239 |
| GLZLM_LZHGE | 0.1793 | 0.3180 | –0.1036 | 0.5660 | 0.2654 | 0.1355 |
| GLZLM_GLNU | 0.6590 | < 0.0001** | 0.4915 | 0.0037* | 0.9181 | < 0.0001** |
| GLZLM_ZLNU | 0.6412 | < 0.0001** | 0.4607 | 0.0070* | 0.8590 | < 0.0001** |
| GLZLM_ZP | 0.1273 | 0.4802 | 0.2988 | 0.0912 | 0.1888 | 0.2926 |
Spearman correlation coefficient (rs) and p-values for metabolic and radiomics features in 2D mode with tumour metabolic volume, tumour staging, and maximum diameter
| 2D features | Diameter (rs) | Diameter ( | AJCC staging (rs) | AJCC satging ( | MTV (rs) | MTV ( |
|---|---|---|---|---|---|---|
| SUVmean/std | –0.0368 | 0.8389 | 0.0310 | 0.8638 | –0.0842 | 0.6412 |
| SUVmin (SUV) | 0.1086 | 0.5475 | –0.0033 | 0.9856 | 0.1889 | 0.2925 |
| SUVmean (SUV) | 0.0746 | 0.6798 | 0.0969 | 0.5915 | 0.1300 | 0.4708 |
| _SUVstd (SUV) | –0.0666 | 0.7127 | 0.0209 | 0.9082 | –0.0154 | 0.9323 |
| SUVmax (SUV) | 0.0698 | 0.6996 | 0.0830 | 0.6400 | 0.1183 | 0.5119 |
| HISTO_Skewness | 0.0740 | 0.6825 | 0.0924 | 0.6090 | 0.0568 | 0.7535 |
| HISTO_Kurtosis | 0.1302 | 0.4703 | –0.1278 | 0.4785 | 0.0739 | 0.6829 |
| HISTO_Entropy_log10 | –0.0746 | 0.6798 | 0.0162 | 0.9289 | –0.0294 | 0.8709 |
| HISTO_Energy | 0.0289 | 0.8730 | –0.0172 | 0.9241 | 0.0137 | 0.9397 |
| GLCM_Homogeneity | 0.0612 | 0.7350 | –0.0419 | 0.8168 | 0.0160 | 0.9294 |
| GLCM_Energy | 0.0256 | 0.8876 | –0.0064 | 0.9720 | 0.0160 | 0.9294 |
| GLCM_Contrast | –0.1024 | 0.5707 | 0.0592 | 0.7436 | –0.0475 | 0.7931 |
| GLCM_Correlation | 0.0492 | 0.7857 | –0.0007 | 0.9968 | 0.0150 | 0.9338 |
| GLCM_Entropy_log10 | –0.0385 | 0.8316 | –0.0167 | 0.9265 | –0.0053 | 0.9764 |
| GLCM_Dissimilarity | –0.0920 | 0.6105 | 0.0494 | 0.7849 | –0.0331 | 0.8549 |
| GLRLM_SRE | –0.0669 | 0.7114 | –0.0719 | 0.6910 | –0.0104 | 0.9544 |
| GLRLM_LRE | 0.1066 | 0.5550 | –0.0719 | 0.6910 | 0.0468 | 0.7959 |
| GLRLM_LGRE | –0.1384 | 0.4425 | –0.077 | 0.6703 | –0.1842 | 0.3049 |
| GLRLM_HGRE | 0.0815 | 0.6522 | 0.0782 | 0.6650 | 0.1257 | 0.4859 |
| GLRLM_SRLGE | –0.1663 | 0.3550 | –0.0824 | 0.6484 | –0.2276 | 0.2027 |
| GLRLM_SRHGE | 0.0882 | 0.6256 | 0.0868 | 0.6311 | 0.1270 | 0.4812 |
| GLRLM_LRLGE | –0.0728 | 0.6873 | –0.0866 | 0.6320 | –0.1217 | 0.5000 |
| GLRLM_LRHGE | 0.1755 | 0.3286 | 0.0902 | 0.6180 | 0.2704 | 0.1280 |
| GLRLM_GLNU | 0.1494 | 0.4066 | –0.2200 | 0.2180 | 0.0956 | 0.5967 |
| GLRLM_RLNU | 0.1389 | 0.4409 | –0.0381 | 0.8330 | 0.0929 | 0.6070 |
| GLRLM_RP | –0.0793 | 0.6609 | 0.0713 | 0.6932 | –0.0237 | 0.8957 |
| NGLDM_Coarseness | –0.2543 | 0.1532 | –0.0378 | 0.8347 | –0.2129 | 0.2342 |
| NGLDM_Contrast | –0.1594 | 0.3754 | 0.0084 | 0.9632 | –0.1080 | 0.5498 |
| NGLDM_Busyness | 0.1300 | 0.4709 | 0.0336 | 0.8528 | 0.1003 | 0.5787 |
| GLZLM_SZE | –0.0612 | 0.7350 | 0.0080 | 0.9640 | –0.0642 | 0.7227 |
| GLZLM_LZE | 0.0766 | 0.6717 | –0.0944 | 0.6013 | 0.0254 | 0.8884 |
| GLZLM_LGZE | –0.1466 | 0.4157 | –0.0920 | 0.6105 | –0.1999 | 0.2647 |
| GLZLM_HGZE | 0.0863 | 0.6329 | 0.1106 | 0.5402 | 0.1337 | 0.4582 |
| GLZLM_SZLGE | –0.1464 | 0.4163 | –0.0871 | 0.6290 | –0.2086 | 0.2441 |
| GLZLM_SZHGE | 0.0447 | 0.8050 | 0.0986 | 0.5852 | 0.0889 | 0.6230 |
| GLZLM_LZLGE | 0 | 1 | –0.0958 | 0.5957 | –0.0428 | 0.8131 |
| GLZLM_LZHGE | 0.2553 | 0.1516 | 0.0425 | 0.8144 | 0.2707 | 0.1275 |
| GLZLM_GLNU | 0.1516 | 0.3525 | –0.1690 | 0.3471 | 0.0789 | 0.6626 |
| GLZLM_ZLNU | 0.0617 | 0.7329 | –0.0134 | 0.9409 | 0.0328 | 0.8564 |
| GLZLM_ZP | –0.0795 | 0.6602 | 0.0801 | 0.6579 | –0.0428 | 0.8131 |
Figure 4The correlation of SUVstd/mean and GLCM entropy with metabolic tumour volume (MTV)
Figure 5Comparison between two hepatocellular carcinoma (HCC) tumour parameters. (A) and (B) compare uptake heterogeneity coefficient and GLCM- entropy of two HCC tumours. Although (B) have a higher metabolic tumour volume, it is more homogenous than tumour (A). (C) and (D) compare the parameters for the same patient in 2D and 3D, respectively