Literature DB >> 33707327

Genome Sequences of Subcluster M2 Mycobacteriophages Estes and Aziz.

Sara K Fitzgerald1, Eleanor H Johnson1, Sophie H R Storz1, Claire Ballard1, Samantha Battaglia1, Mikelle Boice1, Joshua Bramwell-Butcher1, Megan Dedinsky1, Joshua DeKlotz1, Izabel Diaz1, Andrew Engley1, Lindsey Ernst1, Erica Gonzales1, Alyssa Groscost1, Paige Grosser1, Alicia Haider1, Morgan Harrison1, Kurt Husler1, Jalisa Lau1, Melina Monlux1, Jason Paratore1, Trevor Ruesch1, Mikaela Schlesinger1, Anthony Scholes1, Marianne K Poxleitner1, Kirk R Anders2.   

Abstract

Estes and Aziz are mycobacteriophages that were isolated on Mycolicibacterium smegmatis mc2155 at room temperature from soil samples collected in Spokane, WA. Their genome sequences are 83,601 and 83,412 bp long, respectively, and they are members of subcluster M2. Each contains 21 tRNA genes and short conserved repeats characteristic of cluster M phages.
Copyright © 2021 Fitzgerald et al.

Entities:  

Year:  2021        PMID: 33707327      PMCID: PMC7953290          DOI: 10.1128/MRA.00104-21

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN: 2576-098X


  16 in total

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Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

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3.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

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4.  Cluster M mycobacteriophages Bongo, PegLeg, and Rey with unusually large repertoires of tRNA isotypes.

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Journal:  J Virol       Date:  2013-12-11       Impact factor: 5.103

5.  A hidden Markov model for predicting transmembrane helices in protein sequences.

Authors:  E L Sonnhammer; G von Heijne; A Krogh
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6.  A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core.

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Journal:  J Mol Biol       Date:  2017-12-16       Impact factor: 5.469

7.  Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes.

Authors:  Daniel A Russell
Journal:  Methods Mol Biol       Date:  2018

8.  Phamerator: a bioinformatic tool for comparative bacteriophage genomics.

Authors:  Steven G Cresawn; Matt Bogel; Nathan Day; Deborah Jacobs-Sera; Roger W Hendrix; Graham F Hatfull
Journal:  BMC Bioinformatics       Date:  2011-10-12       Impact factor: 3.169

Review 9.  Phage diversity, genomics and phylogeny.

Authors:  Moïra B Dion; Frank Oechslin; Sylvain Moineau
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10.  GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.

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Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

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