Literature DB >> 33707324

Complete Genome Sequence Obtained by Nanopore and Illumina Hybrid Assembly of Xanthomonas arboricola pv. juglandis CPBF 427, Isolated from Buds of a Walnut Tree.

Miguel Teixeira1,2, Camila Fernandes3, Cátia Chaves1, Joana Pinto1, Fernando Tavares4,2, Nuno A Fonseca1.   

Abstract

We report the genome sequence of Xanthomonas arboricola pv. juglandis strain CPBF 427, which was isolated from early-season buds of a diseased walnut tree, suggesting overwinter potential. This study provides a consistent genomic reference for this pathovar and may contribute to addressing the overwinter survival of these walnut pathogens.
Copyright © 2021 Teixeira et al.

Entities:  

Year:  2021        PMID： 33707324      PMCID： PMC7953287          DOI： 10.1128/MRA.00085-21

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  8 in total

1.  BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.

Authors:  Felipe A Simão; Robert M Waterhouse; Panagiotis Ioannidis; Evgenia V Kriventseva; Evgeny M Zdobnov
Journal:  Bioinformatics       Date:  2015-06-09       Impact factor: 6.937

2.  QUAST: quality assessment tool for genome assemblies.

Authors:  Alexey Gurevich; Vladislav Saveliev; Nikolay Vyahhi; Glenn Tesler
Journal:  Bioinformatics       Date:  2013-02-19       Impact factor: 6.937

3.  Colonization of Dormant Walnut Buds by Xanthomonas arboricola pv. juglandis Is Predictive of Subsequent Disease.

Authors:  Steven Lindow; William Olson; Richard Buchner
Journal:  Phytopathology       Date:  2014-11       Impact factor: 4.025

4.  Xanthomonas arboricola Diseases of Stone Fruit, Almond, and Walnut Trees: Progress Toward Understanding and Management.

Authors:  Jay Ram Lamichhane
Journal:  Plant Dis       Date:  2014-12       Impact factor: 4.438

5.  Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.

Authors:  Ryan R Wick; Louise M Judd; Claire L Gorrie; Kathryn E Holt
Journal:  PLoS Comput Biol       Date:  2017-06-08       Impact factor: 4.475

6.  High-Quality Draft Genome Sequence of Xanthomonas arboricola pv. juglandis CPBF 1521, Isolated from Leaves of a Symptomatic Walnut Tree in Portugal without a Past of Phytosanitary Treatment.

Authors:  Camila Fernandes; Jochen Blom; Joël F Pothier; Fernando Tavares
Journal:  Microbiol Resour Announc       Date:  2018-10-25

7.  High-Quality Draft Genome Sequence of Xanthomonas sp. Strain CPBF 424, a Walnut-Pathogenic Strain with Atypical Features.

Authors:  Camila Fernandes; Jochen Blom; Joël F Pothier; Fernando Tavares
Journal:  Microbiol Resour Announc       Date:  2018-10-18

8.  NCBI prokaryotic genome annotation pipeline.

Authors:  Tatiana Tatusova; Michael DiCuccio; Azat Badretdin; Vyacheslav Chetvernin; Eric P Nawrocki; Leonid Zaslavsky; Alexandre Lomsadze; Kim D Pruitt; Mark Borodovsky; James Ostell
Journal:  Nucleic Acids Res       Date:  2016-06-24       Impact factor: 16.971
  8 in total
  1 in total

1.  Comparative Genomics of Xanthomonas euroxanthea and Xanthomonas arboricola pv. juglandis Strains Isolated from a Single Walnut Host Tree.

Authors:  Camila Fernandes; Leonor Martins; Miguel Teixeira; Jochen Blom; Joël F Pothier; Nuno A Fonseca; Fernando Tavares
Journal:  Microorganisms       Date:  2021-03-17
  1 in total

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