Literature DB >> 33707323

Complete Genome Sequence of Stenotrophomonas maltophilia Siphophage Salva.

Brandi Jefferson1, Guichun Yao2, James Clark3, Tram Le1, Carlos Gonzalez2, Mei Liu3, Ben Burrowes4.   

Abstract

Stenotrophomonas maltophilia is a Gram-negative pathogen causing severe and often refractory illnesses such as pneumonia and bacteremia. We present the genome of phage Salva, a novel S. maltophilia phage that is not closely related to any phages currently deposited in GenBank. The genome is 60,789 bp, containing 102 putative protein-coding genes.
Copyright © 2021 Jefferson et al.

Entities:  

Year:  2021        PMID： 33707323      PMCID： PMC7953286          DOI： 10.1128/MRA.00083-21

Source DB:  PubMed          Journal:  Microbiol Resour Announc        ISSN： 2576-098X


  18 in total

1.  Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.

Authors:  A Krogh; B Larsson; G von Heijne; E L Sonnhammer
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

2.  ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.

Authors:  Dean Laslett; Bjorn Canback
Journal:  Nucleic Acids Res       Date:  2004-01-02       Impact factor: 16.971

3.  Conserved translational frameshift in dsDNA bacteriophage tail assembly genes.

Authors:  Jun Xu; Roger W Hendrix; Robert L Duda
Journal:  Mol Cell       Date:  2004-10-08       Impact factor: 17.970

4.  Preparation of a phage DNA fragment library for whole genome shotgun sequencing.

Authors:  Elizabeth J Summer
Journal:  Methods Mol Biol       Date:  2009

Review 5.  Phage Lysis: Multiple Genes for Multiple Barriers.

Authors:  Jesse Cahill; Ry Young
Journal:  Adv Virus Res       Date:  2018-11-28       Impact factor: 9.937

6.  Chaperone-protein interactions that mediate assembly of the bacteriophage lambda tail to the correct length.

Authors:  Jun Xu; Roger W Hendrix; Robert L Duda
Journal:  J Mol Biol       Date:  2013-07-30       Impact factor: 5.469

7.  PhageTerm: a tool for fast and accurate determination of phage termini and packaging mechanism using next-generation sequencing data.

Authors:  Julian R Garneau; Florence Depardieu; Louis-Charles Fortier; David Bikard; Marc Monot
Journal:  Sci Rep       Date:  2017-08-15       Impact factor: 4.379

8.  Apollo: Democratizing genome annotation.

Authors:  Nathan A Dunn; Deepak R Unni; Colin Diesh; Monica Munoz-Torres; Nomi L Harris; Eric Yao; Helena Rasche; Ian H Holmes; Christine G Elsik; Suzanna E Lewis
Journal:  PLoS Comput Biol       Date:  2019-02-06       Impact factor: 4.475

9.  The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.

Authors:  Vahid Jalili; Enis Afgan; Qiang Gu; Dave Clements; Daniel Blankenberg; Jeremy Goecks; James Taylor; Anton Nekrutenko
Journal:  Nucleic Acids Res       Date:  2020-06-25       Impact factor: 16.971

10.  MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes.

Authors:  Hideki Noguchi; Takeaki Taniguchi; Takehiko Itoh
Journal:  DNA Res       Date:  2008-10-21       Impact factor: 4.458
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  1 in total

1.  Complete Genome Sequence of Stenotrophomonas maltophilia Siphophage Siara.

Authors:  John Marmion; Nathaniel Tate; James Clark; Tram Le; Ben Burrowes; Mei Liu
Journal:  Microbiol Resour Announc       Date:  2022-05-02
  1 in total

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