Literature DB >> 32585001

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.

Vahid Jalili1, Enis Afgan2, Qiang Gu1, Dave Clements2, Daniel Blankenberg3, Jeremy Goecks1, James Taylor2, Anton Nekrutenko4.   

Abstract

Entities:  

Year:  2020        PMID: 32585001     DOI: 10.1093/nar/gkaa554

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


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  7 in total

1.  Expanding the Galaxy's reference data.

Authors:  Nagampalli VijayKrishna; Jayadev Joshi; Nate Coraor; Jennifer Hillman-Jackson; Dave Bouvier; Marius van den Beek; Ignacio Eguinoa; Frederik Coppens; John Davis; Michał Stolarczyk; Nathan C Sheffield; Simon Gladman; Gianmauro Cuccuru; Björn Grüning; Nicola Soranzo; Helena Rasche; Bradley W Langhorst; Matthias Bernt; Dan Fornika; David Anderson de Lima Morais; Michel Barrette; Peter van Heusden; Mauro Petrillo; Antonio Puertas-Gallardo; Alex Patak; Hans-Rudolf Hotz; Daniel Blankenberg
Journal:  Bioinform Adv       Date:  2022-04-29

2.  LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis.

Authors:  Ezgi Özkurt; Joachim Fritscher; Nicola Soranzo; Duncan Y K Ng; Robert P Davey; Mohammad Bahram; Falk Hildebrand
Journal:  Microbiome       Date:  2022-10-19       Impact factor: 16.837

3.  The SWI/SNF chromatin remodeling complex helps resolve R-loop-mediated transcription-replication conflicts.

Authors:  Aleix Bayona-Feliu; Sonia Barroso; Sergio Muñoz; Andrés Aguilera
Journal:  Nat Genet       Date:  2021-05-13       Impact factor: 38.330

4.  Complete Genome Sequence of Stenotrophomonas maltophilia Siphophage Salva.

Authors:  Brandi Jefferson; Guichun Yao; James Clark; Tram Le; Carlos Gonzalez; Mei Liu; Ben Burrowes
Journal:  Microbiol Resour Announc       Date:  2021-03-11

5.  VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center.

Authors:  Beatrice Amos; Cristina Aurrecoechea; Matthieu Barba; Ana Barreto; Evelina Y Basenko; Wojciech Bażant; Robert Belnap; Ann S Blevins; Ulrike Böhme; John Brestelli; Brian P Brunk; Mark Caddick; Danielle Callan; Lahcen Campbell; Mikkel B Christensen; George K Christophides; Kathryn Crouch; Kristina Davis; Jeremy DeBarry; Ryan Doherty; Yikun Duan; Michael Dunn; Dave Falke; Steve Fisher; Paul Flicek; Brett Fox; Bindu Gajria; Gloria I Giraldo-Calderón; Omar S Harb; Elizabeth Harper; Christiane Hertz-Fowler; Mark J Hickman; Connor Howington; Sufen Hu; Jay Humphrey; John Iodice; Andrew Jones; John Judkins; Sarah A Kelly; Jessica C Kissinger; Dae Kun Kwon; Kristopher Lamoureux; Daniel Lawson; Wei Li; Kallie Lies; Disha Lodha; Jamie Long; Robert M MacCallum; Gareth Maslen; Mary Ann McDowell; Jaroslaw Nabrzyski; David S Roos; Samuel S C Rund; Stephanie Wever Schulman; Achchuthan Shanmugasundram; Vasily Sitnik; Drew Spruill; David Starns; Christian J Stoeckert; Sheena Shah Tomko; Haiming Wang; Susanne Warrenfeltz; Robert Wieck; Paul A Wilkinson; Lin Xu; Jie Zheng
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

6.  Genome-wide functional screens enable the prediction of high activity CRISPR-Cas9 and -Cas12a guides in Yarrowia lipolytica.

Authors:  Dipankar Baisya; Adithya Ramesh; Cory Schwartz; Stefano Lonardi; Ian Wheeldon
Journal:  Nat Commun       Date:  2022-02-17       Impact factor: 14.919

7.  All-trans retinoic acid induces synaptopodin-dependent metaplasticity in mouse dentate granule cells.

Authors:  Peter Jedlicka; Andreas Vlachos; Maximilian Lenz; Amelie Eichler; Pia Kruse; Julia Muellerleile; Thomas Deller
Journal:  Elife       Date:  2021-11-01       Impact factor: 8.140

  7 in total

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