Literature DB >> 33704450

Genome-wide polygenic risk score for retinopathy of type 2 diabetes.

Iain S Forrest1,2,3,4, Kumardeep Chaudhary1,3,4, Ishan Paranjpe1,4,5, Ha My T Vy1,4, Carla Marquez-Luna1,4, Ghislain Rocheleau1,4, Aparna Saha1,3, Lili Chan1,3,6, Tielman Van Vleck3, Ruth J F Loos1,4,7, Judy Cho1,3,4,6, Louis R Pasquale8,9, Girish N Nadkarni1,3,4,5,6, Ron Do1,3,4.   

Abstract

Diabetic retinopathy (DR) is a common consequence in type 2 diabetes (T2D) and a leading cause of blindness in working-age adults. Yet, its genetic predisposition is largely unknown. Here, we examined the polygenic architecture underlying DR by deriving and assessing a genome-wide polygenic risk score (PRS) for DR. We evaluated the PRS in 6079 individuals with T2D of European, Hispanic, African and other ancestries from a large-scale multi-ethnic biobank. Main outcomes were PRS association with DR diagnosis, symptoms and complications, and time to diagnosis, and transferability to non-European ancestries. We observed that PRS was significantly associated with DR. A standard deviation increase in PRS was accompanied by an adjusted odds ratio (OR) of 1.12 [95% confidence interval (CI) 1.04-1.20; P = 0.001] for DR diagnosis. When stratified by ancestry, PRS was associated with the highest OR in European ancestry (OR = 1.22, 95% CI 1.02-1.41; P = 0.049), followed by African (OR = 1.15, 95% CI 1.03-1.28; P = 0.028) and Hispanic ancestries (OR = 1.10, 95% CI 1.00-1.10; P = 0.050). Individuals in the top PRS decile had a 1.8-fold elevated risk for DR versus the bottom decile (P = 0.002). Among individuals without DR diagnosis, the top PRS decile had more DR symptoms than the bottom decile (P = 0.008). The PRS was associated with retinal hemorrhage (OR = 1.44, 95% CI 1.03-2.02; P = 0.03) and earlier DR presentation (10% probability of DR by 4 years in the top PRS decile versus 8 years in the bottom decile). These results establish the significant polygenic underpinnings of DR and indicate the need for more diverse ancestries in biobanks to develop multi-ancestral PRS.
© The Author(s) 2021. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

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Year:  2021        PMID: 33704450      PMCID: PMC8165647          DOI: 10.1093/hmg/ddab067

Source DB:  PubMed          Journal:  Hum Mol Genet        ISSN: 0964-6906            Impact factor:   5.121


  42 in total

1.  Genome-wide association study for sight-threatening diabetic retinopathy reveals association with genetic variation near the GRB2 gene.

Authors:  Kathryn P Burdon; Rhys D Fogarty; Weiyong Shen; Sotoodeh Abhary; Georgia Kaidonis; Binoy Appukuttan; Alex W Hewitt; Shiwani Sharma; Mark Daniell; Rohan W Essex; John H Chang; Sonja Klebe; Stewart R Lake; Bishwanath Pal; Alicia Jenkins; Gowthaman Govindarjan; Periasamy Sundaresan; Ecosse L Lamoureux; Kim Ramasamy; Maria Pefkianaki; Philip G Hykin; Nikolai Petrovsky; Matthew A Brown; Mark C Gillies; Jamie E Craig
Journal:  Diabetologia       Date:  2015-07-19       Impact factor: 10.122

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Journal:  Transl Pediatr       Date:  2017-10

Review 3.  Global aetiology and epidemiology of type 2 diabetes mellitus and its complications.

Authors:  Yan Zheng; Sylvia H Ley; Frank B Hu
Journal:  Nat Rev Endocrinol       Date:  2017-12-08       Impact factor: 43.330

4.  Galactose-induced retinal capillary basement membrane thickening: prevention by Sorbinil.

Authors:  R N Frank; R J Keirn; A Kennedy; K W Frank
Journal:  Invest Ophthalmol Vis Sci       Date:  1983-11       Impact factor: 4.799

5.  The economic burden of vision loss and eye disorders among the United States population younger than 40 years.

Authors:  John S Wittenborn; Xinzhi Zhang; Charles W Feagan; Wesley L Crouse; Sundar Shrestha; Alex R Kemper; Thomas J Hoerger; Jinan B Saaddine
Journal:  Ophthalmology       Date:  2013-04-28       Impact factor: 12.079

6.  Improving patients' knowledge on the relationship between HbA1c and mean plasma glucose improves glycaemic control among persons with poorly controlled diabetes.

Authors:  Nosheen Iqbal; Catherine Morgan; Hisham Maksoud; Iskandar Idris
Journal:  Ann Clin Biochem       Date:  2008-09       Impact factor: 2.057

7.  A global reference for human genetic variation.

Authors:  Adam Auton; Lisa D Brooks; Richard M Durbin; Erik P Garrison; Hyun Min Kang; Jan O Korbel; Jonathan L Marchini; Shane McCarthy; Gil A McVean; Gonçalo R Abecasis
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

8.  Associations between sleep duration, sleep quality and diabetic retinopathy.

Authors:  Nicholas Y Q Tan; Merwyn Chew; Yih-Chung Tham; Quang Duc Nguyen; Masayuki Yasuda; Ching-Yu Cheng; Tien Yin Wong; Charumathi Sabanayagam
Journal:  PLoS One       Date:  2018-05-24       Impact factor: 3.240

9.  Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.

Authors:  Angli Xue; Yang Wu; Zhihong Zhu; Futao Zhang; Kathryn E Kemper; Zhili Zheng; Loic Yengo; Luke R Lloyd-Jones; Julia Sidorenko; Yeda Wu; Allan F McRae; Peter M Visscher; Jian Zeng; Jian Yang
Journal:  Nat Commun       Date:  2018-07-27       Impact factor: 14.919

10.  Frequency and phenotype of type 1 diabetes in the first six decades of life: a cross-sectional, genetically stratified survival analysis from UK Biobank.

Authors:  Nicholas J Thomas; Samuel E Jones; Michael N Weedon; Beverley M Shields; Richard A Oram; Andrew T Hattersley
Journal:  Lancet Diabetes Endocrinol       Date:  2017-11-30       Impact factor: 44.867

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  4 in total

1.  Polygenic transcriptome risk scores for COPD and lung function improve cross-ethnic portability of prediction in the NHLBI TOPMed program.

Authors:  Xiaowei Hu; Dandi Qiao; Wonji Kim; Matthew Moll; Pallavi P Balte; Leslie A Lange; Traci M Bartz; Rajesh Kumar; Xingnan Li; Bing Yu; Brian E Cade; Cecelia A Laurie; Tamar Sofer; Ingo Ruczinski; Deborah A Nickerson; Donna M Muzny; Ginger A Metcalf; Harshavardhan Doddapaneni; Stacy Gabriel; Namrata Gupta; Shannon Dugan-Perez; L Adrienne Cupples; Laura R Loehr; Deepti Jain; Jerome I Rotter; James G Wilson; Bruce M Psaty; Myriam Fornage; Alanna C Morrison; Ramachandran S Vasan; George Washko; Stephen S Rich; George T O'Connor; Eugene Bleecker; Robert C Kaplan; Ravi Kalhan; Susan Redline; Sina A Gharib; Deborah Meyers; Victor Ortega; Josée Dupuis; Stephanie J London; Tuuli Lappalainen; Elizabeth C Oelsner; Edwin K Silverman; R Graham Barr; Timothy A Thornton; Heather E Wheeler; Michael H Cho; Hae Kyung Im; Ani Manichaikul
Journal:  Am J Hum Genet       Date:  2022-04-05       Impact factor: 11.043

Review 2.  Genetics of Diabetic Retinopathy, a Leading Cause of Irreversible Blindness in the Industrialized World.

Authors:  Ashay D Bhatwadekar; Aumer Shughoury; Ameya Belamkar; Thomas A Ciulla
Journal:  Genes (Basel)       Date:  2021-07-31       Impact factor: 4.141

3.  Association of polymorphisms in the erythropoietin gene with diabetic retinopathy: a case-control study and systematic review with meta-analysis.

Authors:  Luís Fernando Castagnino Sesti; Renan Cesar Sbruzzi; Evelise Regina Polina; Douglas Dos Santos Soares; Daisy Crispim; Luís Henrique Canani; Kátia Gonçalves Dos Santos
Journal:  BMC Ophthalmol       Date:  2022-06-04       Impact factor: 2.086

4.  Genetic and phenotypic profiling of supranormal ejection fraction reveals decreased survival and underdiagnosed heart failure.

Authors:  Iain S Forrest; Ghislain Rocheleau; Shantanu Bafna; Edgar Argulian; Jagat Narula; Pradeep Natarajan; Ron Do
Journal:  Eur J Heart Fail       Date:  2022-03-12       Impact factor: 17.349

  4 in total

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