Literature DB >> 33693565

Iron metabolism strategies in diatoms.

Xia Gao1, Chris Bowler1, Elena Kazamia1.   

Abstract

Diatoms are one of the most successful group of photosynthetic eukaryotes in the contemporary ocean. They are ubiquitously distributed and are the most abundant primary producers in polar waters. Equally remarkable is their ability to tolerate iron deprivation and respond to periodic iron fertilization. Despite their relatively large cell sizes, diatoms tolerate iron limitation and frequently dominate iron-stimulated phytoplankton blooms, both natural and artificial. Here, we review the main iron use strategies of diatoms, including their ability to assimilate and store a range of iron sources, and the adaptations of their photosynthetic machinery and architecture to iron deprivation. Our synthesis relies on published literature and is complemented by a search of 82 diatom transcriptomes, including information collected from seven representatives of the most abundant diatom genera in the world's oceans.
© The Author(s) 2021. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Entities:  

Keywords:  Diatoms; ferritin; iron physiology; iron quotas; iron starvation-induced proteins (ISIPs); iron storage; iron uptake

Year:  2021        PMID: 33693565      PMCID: PMC7966952          DOI: 10.1093/jxb/eraa575

Source DB:  PubMed          Journal:  J Exp Bot        ISSN: 0022-0957            Impact factor:   6.992


  81 in total

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Authors:  J S Martinez; G P Zhang; P D Holt; H T Jung; C J Carrano; M G Haygood; A Butler
Journal:  Science       Date:  2000-02-18       Impact factor: 47.728

2.  The evolutionary inheritance of elemental stoichiometry in marine phytoplankton.

Authors:  Antonietta Quigg; Zoe V Finkel; Andrew J Irwin; Yair Rosenthal; Tung-Yuan Ho; John R Reinfelder; Oscar Schofield; Francois M M Morel; Paul G Falkowski
Journal:  Nature       Date:  2003-09-18       Impact factor: 49.962

3.  Sequencing of the complete genome of an araphid pennate diatom Synedra acus subsp. radians from Lake Baikal.

Authors:  Y P Galachyants; Yu R Zakharova; D P Petrova; A A Morozov; I A Sidorov; A M Marchenkov; M D Logacheva; M L Markelov; K V Khabudaev; Ye V Likhoshway; M A Grachev
Journal:  Dokl Biochem Biophys       Date:  2015-05-05       Impact factor: 0.788

4.  Insights into global diatom distribution and diversity in the world's ocean.

Authors:  Shruti Malviya; Eleonora Scalco; Stéphane Audic; Flora Vincent; Alaguraj Veluchamy; Julie Poulain; Patrick Wincker; Daniele Iudicone; Colomban de Vargas; Lucie Bittner; Adriana Zingone; Chris Bowler
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-29       Impact factor: 11.205

5.  Energetic coupling between plastids and mitochondria drives CO2 assimilation in diatoms.

Authors:  Benjamin Bailleul; Nicolas Berne; Omer Murik; Dimitris Petroutsos; Judit Prihoda; Atsuko Tanaka; Valeria Villanova; Richard Bligny; Serena Flori; Denis Falconet; Anja Krieger-Liszkay; Stefano Santabarbara; Fabrice Rappaport; Pierre Joliot; Leila Tirichine; Paul G Falkowski; Pierre Cardol; Chris Bowler; Giovanni Finazzi
Journal:  Nature       Date:  2015-07-13       Impact factor: 49.962

6.  Phylogenomic fingerprinting of tempo and functions of horizontal gene transfer within ochrophytes.

Authors:  Richard G Dorrell; Adrien Villain; Benoît Perez-Lamarque; Guillemette Audren de Kerdrel; Giselle McCallum; Andrew K Watson; Ouardia Ait-Mohamed; Adriana Alberti; Erwann Corre; Kyle R Frischkorn; Juan J Pierella Karlusich; Eric Pelletier; Hélène Morlon; Chris Bowler; Guillaume Blanc
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-26       Impact factor: 12.779

7.  Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage.

Authors:  Ansgar Gruber; Gabrielle Rocap; Peter G Kroth; E Virginia Armbrust; Thomas Mock
Journal:  Plant J       Date:  2015-01-06       Impact factor: 6.417

8.  Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal.

Authors:  Shinya Sato; Deepak Nanjappa; Richard G Dorrell; Fabio Rocha Jimenez Vieira; Elena Kazamia; Leila Tirichine; Alaguraj Veluchamy; Roland Heilig; Jean-Marc Aury; Olivier Jaillon; Patrick Wincker; Zoltan Fussy; Miroslav Obornik; Sergio A Muñoz-Gómez; David G Mann; Chris Bowler; Adriana Zingone
Journal:  Sci Rep       Date:  2020-06-10       Impact factor: 4.379

9.  HECTAR: a method to predict subcellular targeting in heterokonts.

Authors:  Bernhard Gschloessl; Yann Guermeur; J Mark Cock
Journal:  BMC Bioinformatics       Date:  2008-09-23       Impact factor: 3.169

10.  Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms.

Authors:  Achal Rastogi; Uma Maheswari; Richard G Dorrell; Fabio Rocha Jimenez Vieira; Florian Maumus; Adam Kustka; James McCarthy; Andy E Allen; Paul Kersey; Chris Bowler; Leila Tirichine
Journal:  Sci Rep       Date:  2018-03-19       Impact factor: 4.379

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  4 in total

Review 1.  A quick journey into the diversity of iron uptake strategies in photosynthetic organisms.

Authors:  Amanda Martín-Barranco; Sébastien Thomine; Grégory Vert; Enric Zelazny
Journal:  Plant Signal Behav       Date:  2021-09-13

2.  The iron will of the research community: advances in iron nutrition and interactions in lockdown times.

Authors:  Janneke Balk; Nicolaus von Wirén; Sebastien Thomine
Journal:  J Exp Bot       Date:  2021-03-17       Impact factor: 6.992

3.  Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence.

Authors:  Nina Guérin; Marta Ciccarella; Elisa Flamant; Paul Frémont; Sophie Mangenot; Benjamin Istace; Benjamin Noel; Caroline Belser; Laurie Bertrand; Karine Labadie; Corinne Cruaud; Sarah Romac; Charles Bachy; Martin Gachenot; Eric Pelletier; Adriana Alberti; Olivier Jaillon; Patrick Wincker; Jean-Marc Aury; Quentin Carradec
Journal:  Commun Biol       Date:  2022-09-16

4.  A metabolic, phylogenomic and environmental atlas of diatom plastid transporters from the model species Phaeodactylum.

Authors:  Shun Liu; Mattia Storti; Giovanni Finazzi; Chris Bowler; Richard G Dorrell
Journal:  Front Plant Sci       Date:  2022-09-22       Impact factor: 6.627

  4 in total

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