Literature DB >> 33689750

Pioneering the developmental frontier.

Elizabeth D Larson1, Audrey J Marsh1, Melissa M Harrison2.   

Abstract

Coordinated changes in gene expression allow a single fertilized oocyte to develop into a complex multi-cellular organism. These changes in expression are controlled by transcription factors that gain access to discrete cis-regulatory elements in the genome, allowing them to activate gene expression. Although nucleosomes present barriers to transcription factor occupancy, pioneer transcription factors have unique properties that allow them to bind DNA in the context of nucleosomes, define cis-regulatory elements, and facilitate the subsequent binding of additional factors that determine gene expression. In this capacity, pioneer factors act at the top of gene-regulatory networks to control developmental transitions. Developmental context also influences pioneer factor binding and activity. Here we discuss the interplay between pioneer factors and development, their role in driving developmental transitions, and the influence of the cellular environment on pioneer factor binding and activity.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2021        PMID: 33689750      PMCID: PMC8052302          DOI: 10.1016/j.molcel.2021.02.020

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  88 in total

Review 1.  Grainy head and its target genes in epithelial morphogenesis and wound healing.

Authors:  Shenqiu Wang; Christos Samakovlis
Journal:  Curr Top Dev Biol       Date:  2012       Impact factor: 4.897

2.  Hepatic specification of the gut endoderm in vitro: cell signaling and transcriptional control.

Authors:  R Gualdi; P Bossard; M Zheng; Y Hamada; J R Coleman; K S Zaret
Journal:  Genes Dev       Date:  1996-07-01       Impact factor: 11.361

3.  Dynamic multifactor hubs interact transiently with sites of active transcription in Drosophila embryos.

Authors:  Mustafa Mir; Michael R Stadler; Stephan A Ortiz; Colleen E Hannon; Melissa M Harrison; Xavier Darzacq; Michael B Eisen
Journal:  Elife       Date:  2018-12-27       Impact factor: 8.140

4.  DUX4 activates germline genes, retroelements, and immune mediators: implications for facioscapulohumeral dystrophy.

Authors:  Linda N Geng; Zizhen Yao; Lauren Snider; Abraham P Fong; Jennifer N Cech; Janet M Young; Silvere M van der Maarel; Walter L Ruzzo; Robert C Gentleman; Rabi Tawil; Stephen J Tapscott
Journal:  Dev Cell       Date:  2011-12-29       Impact factor: 12.270

5.  Cooperative Binding of Transcription Factors Orchestrates Reprogramming.

Authors:  Constantinos Chronis; Petko Fiziev; Bernadett Papp; Stefan Butz; Giancarlo Bonora; Shan Sabri; Jason Ernst; Kathrin Plath
Journal:  Cell       Date:  2017-01-19       Impact factor: 41.582

6.  The evolutionary diversification of LSF and Grainyhead transcription factors preceded the radiation of basal animal lineages.

Authors:  Nikki Traylor-Knowles; Ulla Hansen; Timothy Q Dubuc; Mark Q Martindale; Les Kaufman; John R Finnerty
Journal:  BMC Evol Biol       Date:  2010-04-18       Impact factor: 3.260

7.  An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors.

Authors:  Ittai Ben-Porath; Matthew W Thomson; Vincent J Carey; Ruping Ge; George W Bell; Aviv Regev; Robert A Weinberg
Journal:  Nat Genet       Date:  2008-05       Impact factor: 38.330

8.  FOXA1 upregulation promotes enhancer and transcriptional reprogramming in endocrine-resistant breast cancer.

Authors:  Xiaoyong Fu; Resel Pereira; Carmine De Angelis; Jamunarani Veeraraghavan; Sarmistha Nanda; Lanfang Qin; Maria L Cataldo; Vidyalakshmi Sethunath; Sepideh Mehravaran; Carolina Gutierrez; Gary C Chamness; Qin Feng; Bert W O'Malley; Pier Selenica; Britta Weigelt; Jorge S Reis-Filho; Ofir Cohen; Nikhil Wagle; Agostina Nardone; Rinath Jeselsohn; Myles Brown; Mothaffar F Rimawi; C Kent Osborne; Rachel Schiff
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-11       Impact factor: 11.205

9.  Chromatin-modifying enzymes as modulators of reprogramming.

Authors:  Tamer T Onder; Nergis Kara; Anne Cherry; Amit U Sinha; Nan Zhu; Kathrin M Bernt; Patrick Cahan; B Ogan Marcarci; Juli Unternaehrer; Piyush B Gupta; Eric S Lander; Scott A Armstrong; George Q Daley
Journal:  Nature       Date:  2012-03-04       Impact factor: 49.962

10.  FOXA1 is a key determinant of estrogen receptor function and endocrine response.

Authors:  Antoni Hurtado; Kelly A Holmes; Caryn S Ross-Innes; Dominic Schmidt; Jason S Carroll
Journal:  Nat Genet       Date:  2010-12-12       Impact factor: 38.330

View more
  9 in total

Review 1.  Plant transcription factors - being in the right place with the right company.

Authors:  Lucia Strader; Dolf Weijers; Doris Wagner
Journal:  Curr Opin Plant Biol       Date:  2021-11-29       Impact factor: 7.834

Review 2.  Mechanisms that regulate the activities of TET proteins.

Authors:  Kanak Joshi; Shanhui Liu; Peter Breslin S J; Jiwang Zhang
Journal:  Cell Mol Life Sci       Date:  2022-06-15       Impact factor: 9.207

Review 3.  Pioneer factors as master regulators of the epigenome and cell fate.

Authors:  Aurelio Balsalobre; Jacques Drouin
Journal:  Nat Rev Mol Cell Biol       Date:  2022-03-09       Impact factor: 113.915

4.  The landscape of pioneer factor activity reveals the mechanisms of chromatin reprogramming and genome activation.

Authors:  Liyun Miao; Yin Tang; Ashley R Bonneau; Shun Hang Chan; Mina L Kojima; Mark E Pownall; Charles E Vejnar; Feng Gao; Smita Krishnaswamy; Caroline E Hendry; Antonio J Giraldez
Journal:  Mol Cell       Date:  2022-02-18       Impact factor: 19.328

Review 5.  Transcriptional enhancers and their communication with gene promoters.

Authors:  Helen Ray-Jones; Mikhail Spivakov
Journal:  Cell Mol Life Sci       Date:  2021-08-19       Impact factor: 9.261

6.  Cell-type-specific chromatin occupancy by the pioneer factor Zelda drives key developmental transitions in Drosophila.

Authors:  Elizabeth D Larson; Hideyuki Komori; Tyler J Gibson; Cyrina M Ostgaard; Danielle C Hamm; Jack M Schnell; Cheng-Yu Lee; Melissa M Harrison
Journal:  Nat Commun       Date:  2021-12-09       Impact factor: 14.919

7.  The control of transcriptional memory by stable mitotic bookmarking.

Authors:  Maëlle Bellec; Jérémy Dufourt; George Hunt; Hélène Lenden-Hasse; Antonio Trullo; Amal Zine El Aabidine; Marie Lamarque; Marissa M Gaskill; Heloïse Faure-Gautron; Mattias Mannervik; Melissa M Harrison; Jean-Christophe Andrau; Cyril Favard; Ovidiu Radulescu; Mounia Lagha
Journal:  Nat Commun       Date:  2022-03-04       Impact factor: 17.694

8.  Premature translation of the Drosophila zygotic genome activator Zelda is not sufficient to precociously activate gene expression.

Authors:  Elizabeth D Larson; Hideyuki Komori; Zoe A Fitzpatrick; Samuel D Krabbenhoft; Cheng-Yu Lee; Melissa Harrison
Journal:  G3 (Bethesda)       Date:  2022-08-25       Impact factor: 3.542

Review 9.  Transcriptional and Epigenetic Landscape of Cardiac Pacemaker Cells: Insights Into Cellular Specialization in the Sinoatrial Node.

Authors:  Ravi Mandla; Catherine Jung; Vasanth Vedantham
Journal:  Front Physiol       Date:  2021-07-16       Impact factor: 4.566

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.