Literature DB >> 33684112

Optimal prediction with resource constraints using the information bottleneck.

Vedant Sachdeva1, Thierry Mora2,3,4,5, Aleksandra M Walczak2,3,4,5, Stephanie E Palmer6,7.   

Abstract

Responding to stimuli requires that organisms encode information about the external world. Not all parts of the input are important for behavior, and resource limitations demand that signals be compressed. Prediction of the future input is widely beneficial in many biological systems. We compute the trade-offs between representing the past faithfully and predicting the future using the information bottleneck approach, for input dynamics with different levels of complexity. For motion prediction, we show that, depending on the parameters in the input dynamics, velocity or position information is more useful for accurate prediction. We show which motion representations are easiest to re-use for accurate prediction in other motion contexts, and identify and quantify those with the highest transferability. For non-Markovian dynamics, we explore the role of long-term memory in shaping the internal representation. Lastly, we show that prediction in evolutionary population dynamics is linked to clustering allele frequencies into non-overlapping memories.

Entities:  

Year:  2021        PMID: 33684112      PMCID: PMC7971903          DOI: 10.1371/journal.pcbi.1008743

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  32 in total

1.  Statistics of natural images: Scaling in the woods.

Authors: 
Journal:  Phys Rev Lett       Date:  1994-08-08       Impact factor: 9.161

2.  Fractional Brownian motion and motion governed by the fractional Langevin equation in confined geometries.

Authors:  Jae-Hyung Jeon; Ralf Metzler
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-02-01

3.  Neural population coding is optimized by discrete tuning curves.

Authors:  Alexander P Nikitin; Nigel G Stocks; Robert P Morse; Mark D McDonnell
Journal:  Phys Rev Lett       Date:  2009-09-22       Impact factor: 9.161

4.  Harmonic oscillator in heat bath: exact simulation of time-lapse-recorded data and exact analytical benchmark statistics.

Authors:  Simon F Nørrelykke; Henrik Flyvbjerg
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-04-04

5.  Dynamic model of visual recognition predicts neural response properties in the visual cortex.

Authors:  R P Rao; D H Ballard
Journal:  Neural Comput       Date:  1997-05-15       Impact factor: 2.026

6.  Physics of chemoreception.

Authors:  H C Berg; E M Purcell
Journal:  Biophys J       Date:  1977-11       Impact factor: 4.033

7.  Olfactory predictive codes and stimulus templates in piriform cortex.

Authors:  Christina Zelano; Aprajita Mohanty; Jay A Gottfried
Journal:  Neuron       Date:  2011-10-06       Impact factor: 17.173

8.  Past-future information bottleneck for sampling molecular reaction coordinate simultaneously with thermodynamics and kinetics.

Authors:  Yihang Wang; João Marcelo Lamim Ribeiro; Pratyush Tiwary
Journal:  Nat Commun       Date:  2019-08-08       Impact factor: 14.919

9.  How a well-adapting immune system remembers.

Authors:  Andreas Mayer; Vijay Balasubramanian; Aleksandra M Walczak; Thierry Mora
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-15       Impact factor: 11.205

10.  Estimating virus effective population size and selection without neutral markers.

Authors:  Elsa Rousseau; Benoît Moury; Ludovic Mailleret; Rachid Senoussi; Alain Palloix; Vincent Simon; Sophie Valière; Frédéric Grognard; Frédéric Fabre
Journal:  PLoS Pathog       Date:  2017-11-20       Impact factor: 6.823

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  1 in total

Review 1.  Efficient Temporal Coding in the Early Visual System: Existing Evidence and Future Directions.

Authors:  Byron H Price; Jeffrey P Gavornik
Journal:  Front Comput Neurosci       Date:  2022-07-04       Impact factor: 3.387

  1 in total

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