Literature DB >> 20365526

Fractional Brownian motion and motion governed by the fractional Langevin equation in confined geometries.

Jae-Hyung Jeon1, Ralf Metzler.   

Abstract

Motivated by subdiffusive motion of biomolecules observed in living cells, we study the stochastic properties of a non-Brownian particle whose motion is governed by either fractional Brownian motion or the fractional Langevin equation and restricted to a finite domain. We investigate by analytic calculations and simulations how time-averaged observables (e.g., the time-averaged mean-squared displacement and displacement correlation) are affected by spatial confinement and dimensionality. In particular, we study the degree of weak ergodicity breaking and scatter between different single trajectories for this confined motion in the subdiffusive domain. The general trend is that deviations from ergodicity are decreased with decreasing size of the movement volume and with increasing dimensionality. We define the displacement correlation function and find that this quantity shows distinct features for fractional Brownian motion, fractional Langevin equation, and continuous time subdiffusion, such that it appears an efficient measure to distinguish these different processes based on single-particle trajectory data.

Mesh:

Year:  2010        PMID: 20365526     DOI: 10.1103/PhysRevE.81.021103

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  18 in total

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2.  Subdiffusive Dynamics Lead to Depleted Particle Densities near Cellular Borders.

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5.  Universal algorithm for identification of fractional Brownian motion. A case of telomere subdiffusion.

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Review 7.  Rad4 recognition-at-a-distance: Physical basis of conformation-specific anomalous diffusion of DNA repair proteins.

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8.  Computational modelling of cell motility modes emerging from cell-matrix adhesion dynamics.

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Journal:  PLoS Comput Biol       Date:  2022-02-14       Impact factor: 4.475

9.  3D trajectories adopted by coding and regulatory DNA elements: first-passage times for genomic interactions.

Authors:  Joseph S Lucas; Yaojun Zhang; Olga K Dudko; Cornelis Murre
Journal:  Cell       Date:  2014-07-03       Impact factor: 41.582

10.  Meaningful interpretation of subdiffusive measurements in living cells (crowded environment) by fluorescence fluctuation microscopy.

Authors:  Gerd Baumann; Robert F Place; Zeno Földes-Papp
Journal:  Curr Pharm Biotechnol       Date:  2010-08       Impact factor: 2.837

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