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Literature DB >> 3368327

Compilation of 5S rRNA and 5S rRNA gene sequences.

Abstract

The BERLIN RNA DATABANK as of December 31, 1987, contains a total of 509 sequences of 5S rRNAs or their genes, which is an increase of 45% over the last (1986) compilation (1). It covers sequences from 38 archaebacteria, 184 eubacteria, 14 plastids, 4 mitochondria, 258 eukaryotes and 11 eukaryotic pseudogenes. The BERLIN RNA DATABANK uses the format of the EMBL Nucleotide Sequence Data Library complemented by a Sequence Alignment (SA) field including secondary structure information as presented in this publication. The BERLIN RNA DATABANK is available on 360 or 1200 kb diskettes.

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Year: 1988 PMID： 3368327 PMCID： PMC340909 DOI： 10.1093/nar/16.suppl.r1

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

20 in total

1. A phylogenetic definition of the major eubacterial taxa.

Authors: C R Woese; E Stackebrandt; T J Macke; G E Fox
Journal: Syst Appl Microbiol Date: 1985 Impact factor: 4.022

2. Nucleotide sequence of 5 S RNA from Torulopsis utilis.

Authors: K Nishikawa; S Takemura
Journal: FEBS Lett Date: 1974-03-15 Impact factor: 4.124

3. A unique secondary folding pattern for 5S RNA corresponds to the lowest energy homologous secondary structure in 17 different prokaryotes.

Authors: G M Studnicka; F A Eiserling; J A Lake
Journal: Nucleic Acids Res Date: 1981-04-24 Impact factor: 16.971

4. Conservation of secondary structure in 5 S ribosomal RNA: a uniform model for eukaryotic, eubacterial, archaebacterial and organelle sequences is energetically favourable.

Authors: R De Wachter; M W Chen; A Vandenberghe
Journal: Biochimie Date: 1982-05 Impact factor: 4.079

5. Consensus structure and evolution of 5S rRNA.

Authors: H Küntzel; B Piechulla; U Hahn
Journal: Nucleic Acids Res Date: 1983-02-11 Impact factor: 16.971

6. Comparative sequence analysis as an approach to evaluating structure, function, and evolution of 5S and 5.8S ribosomal RNAs.

Authors: R M MacKay; D F Spencer; M N Schnare; W F Doolittle; M W Gray
Journal: Can J Biochem Date: 1982-04

7. A newly revised classification of the protozoa.

Authors: N D Levine; J O Corliss; F E Cox; G Deroux; J Grain; B M Honigberg; G F Leedale; A R Loeblich; J Lom; D Lynn; E G Merinfeld; F C Page; G Poljansky; V Sprague; J Vavra; F G Wallace
Journal: J Protozool Date: 1980-02

8. Universal secondary structures of prokaryotic and eukaryotic ribosomal 5S RNA derived from comparative analysis of their sequences.

Authors: S Böhm; H Fabian; H Welfle
Journal: Acta Biol Med Ger Date: 1981

9. Generalized structures of the 5S ribosomal RNAs.

Authors: N Delihas; J Andersen
Journal: Nucleic Acids Res Date: 1982-11-25 Impact factor: 16.971

10. 5S rRNA sequences from eight basidiomycetes and fungi imperfecti.

Authors: W F Walker; W F Doolittle
Journal: Nucleic Acids Res Date: 1983-11-11 Impact factor: 16.971

29 in total

1. Compilation of 5S rRNA and 5S rRNA gene sequences.

Authors: T Specht; J Wolters; V A Erdmann
Journal: Nucleic Acids Res Date: 1991-04-25 Impact factor: 16.971

2. Processing and termination of 23S rRNA-5S rRNA-tRNA(Gly) primary transcripts in Thermus thermophilus HB8.

Authors: R K Hartmann; H Y Toschka; V A Erdmann
Journal: J Bacteriol Date: 1991-04 Impact factor: 3.490

3. Sequence, proposed secondary structure, and phylogenetic analysis of the chloroplast 5S rRNA gene of the brown alga Pylaiella littoralis (L.) Kjellm.

Authors: C C Somerville; S Jouannic; S Loiseaux-de Goër
Journal: J Mol Evol Date: 1992-03 Impact factor: 2.395

4. Compilation of 5S rRNA and 5S rRNA gene sequences.

Authors: T Specht; J Wolters; V A Erdmann
Journal: Nucleic Acids Res Date: 1990-04-25 Impact factor: 16.971

5. Sequence of the 5S rRNA gene from Sinapis alba.

Authors: I Capesius
Journal: Plant Mol Biol Date: 1991-07 Impact factor: 4.076

6. The primary structure of 5S ribosomal RNAs from Magnolia cobus and Magnolia stellata.

Authors: M Nalaskowska; T D Mashkova; J Barciszewski
Journal: Nucleic Acids Res Date: 1990-02-11 Impact factor: 16.971

7. Use of the polymerase chain reaction to detect spacer size heterogeneity in plant 5S-rRNA gene clusters and to locate such clusters in wheat (Triticum aestivum L.).

Authors: A V Cox; M D Bennett; T A Dyer
Journal: Theor Appl Genet Date: 1992-04 Impact factor: 5.699

8. A specific oligonucleotide of the 5S rDNA spacer and species-specific elements identify symmetric somatic hybrids between Solanum tuberosum and S. pinnatisectum.

Authors: C Zanke; N Borisjuk; B Ruoss; L Schilde-Rentschler; H Ninnemann; V Hemleben
Journal: Theor Appl Genet Date: 1995-04 Impact factor: 5.699

9. A quantitative map of nucleotide substitution rates in bacterial rRNA.

Authors: Y Van de Peer; S Chapelle; R De Wachter
Journal: Nucleic Acids Res Date: 1996-09-01 Impact factor: 16.971

10. Isolation and characterization of the 5S rRNA gene of Leptospira interrogans.

Authors: M Fukunaga; I Horie; I Mifuchi
Journal: J Bacteriol Date: 1990-06 Impact factor: 3.490