Literature DB >> 1692116

Compilation of 5S rRNA and 5S rRNA gene sequences.

T Specht1, J Wolters, V A Erdmann.   

Abstract

The BERLIN RNA DATABANK as of December 31, 1989, contains a total of 667 sequences of 5S rRNAs or their genes, which is an increase of 114 new sequence entries over the last compilation (1). It covers sequences from 44 archaebacteria, 267 eubacteria, 20 plastids, 6 mitochondria, 319 eukaryotes and 11 eukaryotic pseudogenes. The hardcopy shows only the list of those organisms whose sequences have been determined. The BERLIN RNA DATABANK uses the format of the EMBL Nucleotide Sequence Data Library complemented by a Sequence Alignment (SA) field including secondary structure information.

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Year:  1990        PMID： 1692116      PMCID： PMC331873          DOI： 10.1093/nar/18.suppl.2215

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  10 in total

Review 1.  Bacterial evolution.

Authors:  C R Woese
Journal:  Microbiol Rev       Date:  1987-06

2.  Nomenclature for incompletely specified bases in nucleic acid sequences: recommendations 1984.

Authors:  A Cornish-Bowden
Journal:  Nucleic Acids Res       Date:  1985-05-10       Impact factor: 16.971

3.  Compilation of 5S rRNA and 5S rRNA gene sequences.

Authors:  J Wolters; V A Erdmann
Journal:  Nucleic Acids Res       Date:  1988       Impact factor: 16.971

4.  Nuclease S1 analysis of eubacterial 5S rRNA secondary structure.

Authors:  M T MacDonell; R R Colwell
Journal:  J Mol Evol       Date:  1985       Impact factor: 2.395

5.  Nucleotide sequence of 5 S RNA from Torulopsis utilis.

Authors:  K Nishikawa; S Takemura
Journal:  FEBS Lett       Date:  1974-03-15       Impact factor: 4.124

6.  5S RNA structure and interaction with transcription factor A. 1. Ribonuclease probe of the structure of 5S RNA from Xenopus laevis oocytes.

Authors:  J Andersen; N Delihas; J S Hanas; C W Wu
Journal:  Biochemistry       Date:  1984-11-20       Impact factor: 3.162

7.  5S RNA secondary structure.

Authors:  G E Fox; C R Woese
Journal:  Nature       Date:  1975-08-07       Impact factor: 49.962

8.  Generalized structures of the 5S ribosomal RNAs.

Authors:  N Delihas; J Andersen
Journal:  Nucleic Acids Res       Date:  1982-11-25       Impact factor: 16.971

9.  5S RNA structure and interaction with transcription factor A. 2. Ribonuclease probe of the 7S particle from Xenopus laevis immature oocytes and RNA exchange properties of the 7S particle.

Authors:  J Andersen; N Delihas; J S Hanas; C W Wu
Journal:  Biochemistry       Date:  1984-11-20       Impact factor: 3.162

10.  A model for the interaction of nucleic acids with transcription factor IIIA.

Authors:  J Andersen
Journal:  FEBS Lett       Date:  1987-06-15       Impact factor: 4.124
  10 in total
  17 in total

1.  Conformational dynamics of a 5S rRNA hairpin domain containing loop D and a single nucleotide bulge.

Authors:  J Sarzynska; T Kulinski; L Nilsson
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

2.  A 16 kb small single-copy region separates the plastid DNA inverted repeat of the unicellular red alga Cyanidium caldarium: physical mapping of the IR-flanking regions and nucleotide sequences of the psbD-psbC, rps16, 5S rRNA and rpl21 genes.

Authors:  U Maid; K Zetsche
Journal:  Plant Mol Biol       Date:  1992-09       Impact factor: 4.076

3.  Nucleotide sequence of the 5S rRNA gene from Glycine soja.

Authors:  A Kolchinsky; P M Gresshoff
Journal:  Plant Mol Biol       Date:  1992-09       Impact factor: 4.076

4.  The ribosomal RNA database project.

Authors:  G J Olsen; N Larsen; C R Woese
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

5.  Compilation of 5S rRNA and 5S rRNA gene sequences.

Authors:  T Specht; J Wolters; V A Erdmann
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

6.  The nucleotide sequence of ribosomal 5S RNA from lettuce seeds.

Authors:  M Nalaskowska; T Opiola; J Barciszewski
Journal:  Nucleic Acids Res       Date:  1991-03-25       Impact factor: 16.971

7.  Sequence, proposed secondary structure, and phylogenetic analysis of the chloroplast 5S rRNA gene of the brown alga Pylaiella littoralis (L.) Kjellm.

Authors:  C C Somerville; S Jouannic; S Loiseaux-de Goër
Journal:  J Mol Evol       Date:  1992-03       Impact factor: 2.395

8.  Comparison of free-living and particle-associated bacterial communities in the chesapeake bay by stable low-molecular-weight RNA analysis.

Authors:  K D Bidle; M Fletcher
Journal:  Appl Environ Microbiol       Date:  1995-03       Impact factor: 4.792

9.  Natural Microbial Community Compositions Compared by a Back-Propagating Neural Network and Cluster Analysis of 5S rRNA.

Authors:  P A Noble; K D Bidle; M Fletcher
Journal:  Appl Environ Microbiol       Date:  1997-05       Impact factor: 4.792

10.  The NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyl-tRNA synthetases.

Authors:  M Stoldt; J Wöhnert; M Görlach; L R Brown
Journal:  EMBO J       Date:  1998-11-02       Impact factor: 11.598
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