Literature DB >> 33681463

Identifying Robust Radiomics Features for Lung Cancer by Using In-Vivo and Phantom Lung Lesions.

Lin Lu1, Shawn H Sun1, Aaron Afran1, Hao Yang1, Zheng Feng Lu1, James So1, Lawrence H Schwartz1, Binsheng Zhao1.   

Abstract

We propose a novel framework for determining radiomics feature robustness by considering the effects of both biological and noise signals. This framework is preliminarily tested in a study predicting the epidermal growth factor receptor (EGFR) mutation status in non-small cell lung cancer (NSCLC) patients. Pairs of CT images (baseline, 3-week post therapy) of 46 NSCLC patients with known EGFR mutation status were collected and a FDA-customized anthropomorphic thoracic phantom was scanned on two vendors' scanners at four different tube currents. Delta radiomics features were extracted from the NSCLC patient CTs and reproducible, non-redundant, and informative features were identified. The feature value differences between EGFR mutant and EGFR wildtype patients were quantitatively measured as the biological signal. Similarly, radiomics features were extracted from the phantom CTs. A pairwise comparison between settings resulted in a feature value difference that was quantitatively measured as the noise signal. Biological signals were compared to noise signals at each setting to determine if the distributions were significantly different by two-sample t-test, and thus robust. Four optimal features were selected to predict EGFR mutation status, Tumor-Mass, Sigmoid-Offset-Mean, Gabor-Energy and DWT-Energy, which quantified tumor mass, tumor-parenchyma density transition at boundary, line-like pattern inside tumor and intratumoral heterogeneity, respectively. The first three variables showed robustness across the majority of studied CT acquisition parameters. The textual feature DWT-Energy was less robust. The proposed framework was able to determine robustness of radiomics features at specific settings by comparing biological signal to noise signal. Identification of robust radiomics features may improve the generalizability of radiomics models in future studies.
© 2021 by the authors.

Entities:  

Keywords:  EGFR; NSCLC; phantom; radiomics; reproducibility; robustness

Mesh:

Year:  2021        PMID: 33681463      PMCID: PMC7934702          DOI: 10.3390/tomography7010005

Source DB:  PubMed          Journal:  Tomography        ISSN: 2379-1381


  33 in total

1.  Reproducibility of CT Radiomic Features within the Same Patient: Influence of Radiation Dose and CT Reconstruction Settings.

Authors:  Mathias Meyer; James Ronald; Federica Vernuccio; Rendon C Nelson; Juan Carlos Ramirez-Giraldo; Justin Solomon; Bhavik N Patel; Ehsan Samei; Daniele Marin
Journal:  Radiology       Date:  2019-10-01       Impact factor: 11.105

2.  Using a single abdominal computed tomography image to differentiate five contrast-enhancement phases: A machine-learning algorithm for radiomics-based precision medicine.

Authors:  Laurent Dercle; Jingchen Ma; Chuanmiao Xie; Ai-Ping Chen; Deling Wang; Lyndon Luk; Paul Revel-Mouroz; Philippe Otal; Jean-Marie Peron; Hervé Rousseau; Lin Lu; Lawrence H Schwartz; Fatima-Zohra Mokrane; Binsheng Zhao
Journal:  Eur J Radiol       Date:  2020-01-28       Impact factor: 4.531

3.  Quantifying the margin sharpness of lesions on radiological images for content-based image retrieval.

Authors:  Jiajing Xu; Sandy Napel; Hayit Greenspan; Christopher F Beaulieu; Neeraj Agrawal; Daniel Rubin
Journal:  Med Phys       Date:  2012-09       Impact factor: 4.071

4.  Radiomic Machine-Learning Classifiers for Prognostic Biomarkers of Head and Neck Cancer.

Authors:  Chintan Parmar; Patrick Grossmann; Derek Rietveld; Michelle M Rietbergen; Philippe Lambin; Hugo J W L Aerts
Journal:  Front Oncol       Date:  2015-12-03       Impact factor: 6.244

5.  Defining a Radiomic Response Phenotype: A Pilot Study using targeted therapy in NSCLC.

Authors:  Hugo J W L Aerts; Patrick Grossmann; Yongqiang Tan; Geoffrey R Oxnard; Naiyer Rizvi; Lawrence H Schwartz; Binsheng Zhao
Journal:  Sci Rep       Date:  2016-09-20       Impact factor: 4.379

Review 6.  Imaging biomarker roadmap for cancer studies.

Authors:  James P B O'Connor; Eric O Aboagye; Judith E Adams; Hugo J W L Aerts; Sally F Barrington; Ambros J Beer; Ronald Boellaard; Sarah E Bohndiek; Michael Brady; Gina Brown; David L Buckley; Thomas L Chenevert; Laurence P Clarke; Sandra Collette; Gary J Cook; Nandita M deSouza; John C Dickson; Caroline Dive; Jeffrey L Evelhoch; Corinne Faivre-Finn; Ferdia A Gallagher; Fiona J Gilbert; Robert J Gillies; Vicky Goh; John R Griffiths; Ashley M Groves; Steve Halligan; Adrian L Harris; David J Hawkes; Otto S Hoekstra; Erich P Huang; Brian F Hutton; Edward F Jackson; Gordon C Jayson; Andrew Jones; Dow-Mu Koh; Denis Lacombe; Philippe Lambin; Nathalie Lassau; Martin O Leach; Ting-Yim Lee; Edward L Leen; Jason S Lewis; Yan Liu; Mark F Lythgoe; Prakash Manoharan; Ross J Maxwell; Kenneth A Miles; Bruno Morgan; Steve Morris; Tony Ng; Anwar R Padhani; Geoff J M Parker; Mike Partridge; Arvind P Pathak; Andrew C Peet; Shonit Punwani; Andrew R Reynolds; Simon P Robinson; Lalitha K Shankar; Ricky A Sharma; Dmitry Soloviev; Sigrid Stroobants; Daniel C Sullivan; Stuart A Taylor; Paul S Tofts; Gillian M Tozer; Marcel van Herk; Simon Walker-Samuel; James Wason; Kaye J Williams; Paul Workman; Thomas E Yankeelov; Kevin M Brindle; Lisa M McShane; Alan Jackson; John C Waterton
Journal:  Nat Rev Clin Oncol       Date:  2016-10-11       Impact factor: 66.675

7.  Reliability of Radiomic Features Across Multiple Abdominal CT Image Acquisition Settings: A Pilot Study Using ACR CT Phantom.

Authors:  Lin Lu; Yongguang Liang; Lawrence H Schwartz; Binsheng Zhao
Journal:  Tomography       Date:  2019-03

8.  Multicentric validation of radiomics findings: challenges and opportunities.

Authors:  Mathieu Hatt; François Lucia; Ulrike Schick; Dimitris Visvikis
Journal:  EBioMedicine       Date:  2019-08-29       Impact factor: 8.143

9.  A quantitative imaging biomarker for predicting disease-free-survival-associated histologic subgroups in lung adenocarcinoma.

Authors:  Lin Lu; Deling Wang; Lili Wang; Linning E; Pingzhen Guo; Zhiming Li; Jin Xiang; Hao Yang; Hui Li; Shaohan Yin; Lawrence H Schwartz; Chuanmiao Xie; Binsheng Zhao
Journal:  Eur Radiol       Date:  2020-02-21       Impact factor: 5.315

10.  Can CT radiomic analysis in NSCLC predict histology and EGFR mutation status?

Authors:  Subba R Digumarthy; Atul M Padole; Roberto Lo Gullo; Lecia V Sequist; Mannudeep K Kalra
Journal:  Medicine (Baltimore)       Date:  2019-01       Impact factor: 1.889

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  2 in total

1.  Delta radiomics: a systematic review.

Authors:  Valerio Nardone; Alfonso Reginelli; Roberta Grassi; Luca Boldrini; Giovanna Vacca; Emma D'Ippolito; Salvatore Annunziata; Alessandra Farchione; Maria Paola Belfiore; Isacco Desideri; Salvatore Cappabianca
Journal:  Radiol Med       Date:  2021-12-04       Impact factor: 3.469

2.  Convolutional Neural Network Addresses the Confounding Impact of CT Reconstruction Kernels on Radiomics Studies.

Authors:  Jin H Yoon; Shawn H Sun; Manjun Xiao; Hao Yang; Lin Lu; Yajun Li; Lawrence H Schwartz; Binsheng Zhao
Journal:  Tomography       Date:  2021-12-03
  2 in total

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