Literature DB >> 33672752

MB-AI-His: Histopathological Diagnosis of Pediatric Medulloblastoma and its Subtypes via AI.

Omneya Attallah1.   

Abstract

Medulloblastoma (MB) is a dangerous malignant pediatric brain tumor that could lead to death. It is considered the most common pediatric cancerous brain tumor. Precise and timely diagnosis of pediatric MB and its four subtypes (defined by the World Health Organization (WHO)) is essential to decide the appropriate follow-up plan and suitable treatments to prevent its progression and reduce mortality rates. Histopathology is the gold standard modality for the diagnosis of MB and its subtypes, but manual diagnosis via a pathologist is very complicated, needs excessive time, and is subjective to the pathologists' expertise and skills, which may lead to variability in the diagnosis or misdiagnosis. The main purpose of the paper is to propose a time-efficient and reliable computer-aided diagnosis (CADx), namely MB-AI-His, for the automatic diagnosis of pediatric MB and its subtypes from histopathological images. The main challenge in this work is the lack of datasets available for the diagnosis of pediatric MB and its four subtypes and the limited related work. Related studies are based on either textural analysis or deep learning (DL) feature extraction methods. These studies used individual features to perform the classification task. However, MB-AI-His combines the benefits of DL techniques and textural analysis feature extraction methods through a cascaded manner. First, it uses three DL convolutional neural networks (CNNs), including DenseNet-201, MobileNet, and ResNet-50 CNNs to extract spatial DL features. Next, it extracts time-frequency features from the spatial DL features based on the discrete wavelet transform (DWT), which is a textural analysis method. Finally, MB-AI-His fuses the three spatial-time-frequency features generated from the three CNNs and DWT using the discrete cosine transform (DCT) and principal component analysis (PCA) to produce a time-efficient CADx system. MB-AI-His merges the privileges of different CNN architectures. MB-AI-His has a binary classification level for classifying among normal and abnormal MB images, and a multi-classification level to classify among the four subtypes of MB. The results of MB-AI-His show that it is accurate and reliable for both the binary and multi-class classification levels. It is also a time-efficient system as both the PCA and DCT methods have efficiently reduced the training execution time. The performance of MB-AI-His is compared with related CADx systems, and the comparison verified the powerfulness of MB-AI-His and its outperforming results. Therefore, it can support pathologists in the accurate and reliable diagnosis of MB and its subtypes from histopathological images. It can also reduce the time and cost of the diagnosis procedure which will correspondingly lead to lower death rates.

Entities:  

Keywords:  computer-aided diagnosis (CADx); convolutional neural network (CNN); discrete cosine transform (DCT); discrete wavelet transform (DWT); histopathology; pediatric medulloblastoma (MB) diagnosis; principal component analysis (PCA)

Year:  2021        PMID: 33672752     DOI: 10.3390/diagnostics11020359

Source DB:  PubMed          Journal:  Diagnostics (Basel)        ISSN: 2075-4418


  12 in total

1.  ECG-BiCoNet: An ECG-based pipeline for COVID-19 diagnosis using Bi-Layers of deep features integration.

Authors:  Omneya Attallah
Journal:  Comput Biol Med       Date:  2022-01-05       Impact factor: 4.589

2.  Unsupervised Learning Based on Multiple Descriptors for WSIs Diagnosis.

Authors:  Taimoor Shakeel Sheikh; Jee-Yeon Kim; Jaesool Shim; Migyung Cho
Journal:  Diagnostics (Basel)       Date:  2022-06-16

3.  An Intelligent ECG-Based Tool for Diagnosing COVID-19 via Ensemble Deep Learning Techniques.

Authors:  Omneya Attallah
Journal:  Biosensors (Basel)       Date:  2022-05-05

4.  MRI Radiogenomics of Pediatric Medulloblastoma: A Multicenter Study.

Authors:  Michael Zhang; Samuel W Wong; Jason N Wright; Matthias W Wagner; Sebastian Toescu; Michelle Han; Lydia T Tam; Quan Zhou; Saman S Ahmadian; Katie Shpanskaya; Seth Lummus; Hollie Lai; Azam Eghbal; Alireza Radmanesh; Jordan Nemelka; Stephen Harward; Michael Malinzak; Suzanne Laughlin; Sébastien Perreault; Kristina R M Braun; Robert M Lober; Yoon Jae Cho; Birgit Ertl-Wagner; Chang Y Ho; Kshitij Mankad; Hannes Vogel; Samuel H Cheshier; Thomas S Jacques; Kristian Aquilina; Paul G Fisher; Michael Taylor; Tina Poussaint; Nicholas A Vitanza; Gerald A Grant; Stefan Pfister; Eric Thompson; Alok Jaju; Vijay Ramaswamy; Kristen W Yeom
Journal:  Radiology       Date:  2022-04-19       Impact factor: 29.146

5.  GASTRO-CADx: a three stages framework for diagnosing gastrointestinal diseases.

Authors:  Omneya Attallah; Maha Sharkas
Journal:  PeerJ Comput Sci       Date:  2021-03-10

6.  Histo-CADx: duo cascaded fusion stages for breast cancer diagnosis from histopathological images.

Authors:  Omneya Attallah; Fatma Anwar; Nagia M Ghanem; Mohamed A Ismail
Journal:  PeerJ Comput Sci       Date:  2021-04-27

7.  Intelligent Dermatologist Tool for Classifying Multiple Skin Cancer Subtypes by Incorporating Manifold Radiomics Features Categories.

Authors:  Omneya Attallah; Maha Sharkas
Journal:  Contrast Media Mol Imaging       Date:  2021-09-15       Impact factor: 3.161

8.  AI-Based Pipeline for Classifying Pediatric Medulloblastoma Using Histopathological and Textural Images.

Authors:  Omneya Attallah; Shaza Zaghlool
Journal:  Life (Basel)       Date:  2022-02-03

9.  A computer-aided diagnostic framework for coronavirus diagnosis using texture-based radiomics images.

Authors:  Omneya Attallah
Journal:  Digit Health       Date:  2022-04-11

10.  A wavelet-based deep learning pipeline for efficient COVID-19 diagnosis via CT slices.

Authors:  Omneya Attallah; Ahmed Samir
Journal:  Appl Soft Comput       Date:  2022-07-29       Impact factor: 8.263

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