Literature DB >> 35438562

MRI Radiogenomics of Pediatric Medulloblastoma: A Multicenter Study.

Michael Zhang1, Samuel W Wong1, Jason N Wright1, Matthias W Wagner1, Sebastian Toescu1, Michelle Han1, Lydia T Tam1, Quan Zhou1, Saman S Ahmadian1, Katie Shpanskaya1, Seth Lummus1, Hollie Lai1, Azam Eghbal1, Alireza Radmanesh1, Jordan Nemelka1, Stephen Harward1, Michael Malinzak1, Suzanne Laughlin1, Sébastien Perreault1, Kristina R M Braun1, Robert M Lober1, Yoon Jae Cho1, Birgit Ertl-Wagner1, Chang Y Ho1, Kshitij Mankad1, Hannes Vogel1, Samuel H Cheshier1, Thomas S Jacques1, Kristian Aquilina1, Paul G Fisher1, Michael Taylor1, Tina Poussaint1, Nicholas A Vitanza1, Gerald A Grant1, Stefan Pfister1, Eric Thompson1, Alok Jaju1, Vijay Ramaswamy1, Kristen W Yeom1.   

Abstract

Background Radiogenomics of pediatric medulloblastoma (MB) offers an opportunity for MB risk stratification, which may aid therapeutic decision making, family counseling, and selection of patient groups suitable for targeted genetic analysis. Purpose To develop machine learning strategies that identify the four clinically significant MB molecular subgroups. Materials and Methods In this retrospective study, consecutive pediatric patients with newly diagnosed MB at MRI at 12 international pediatric sites between July 1997 and May 2020 were identified. There were 1800 features extracted from T2- and contrast-enhanced T1-weighted preoperative MRI scans. A two-stage sequential classifier was designed-one that first identifies non-wingless (WNT) and non-sonic hedgehog (SHH) MB and then differentiates therapeutically relevant WNT from SHH. Further, a classifier that distinguishes high-risk group 3 from group 4 MB was developed. An independent, binary subgroup analysis was conducted to uncover radiomics features unique to infantile versus childhood SHH subgroups. The best-performing models from six candidate classifiers were selected, and performance was measured on holdout test sets. CIs were obtained by bootstrapping the test sets for 2000 random samples. Model accuracy score was compared with the no-information rate using the Wald test. Results The study cohort comprised 263 patients (mean age ± SD at diagnosis, 87 months ± 60; 166 boys). A two-stage classifier outperformed a single-stage multiclass classifier. The combined, sequential classifier achieved a microaveraged F1 score of 88% and a binary F1 score of 95% specifically for WNT. A group 3 versus group 4 classifier achieved an area under the receiver operating characteristic curve of 98%. Of the Image Biomarker Standardization Initiative features, texture and first-order intensity features were most contributory across the molecular subgroups. Conclusion An MRI-based machine learning decision path allowed identification of the four clinically relevant molecular pediatric medulloblastoma subgroups. © RSNA, 2022 Online supplemental material is available for this article. See also the editorial by Chaudhary and Bapuraj in this issue.

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Year:  2022        PMID: 35438562      PMCID: PMC9340239          DOI: 10.1148/radiol.212137

Source DB:  PubMed          Journal:  Radiology        ISSN: 0033-8419            Impact factor:   29.146


  33 in total

1.  Molecular subgrouping of medulloblastoma based on few-shot learning of multitasking using conventional MR images: a retrospective multicenter study.

Authors:  Xi Chen; Zhen Fan; Kay Ka-Wai Li; Guoqing Wu; Zhong Yang; Xin Gao; Yingchao Liu; Haibo Wu; Hong Chen; Qisheng Tang; Liang Chen; Yuanyuan Wang; Ying Mao; Ho-Keung Ng; Zhifeng Shi; Jinhua Yu; Liangfu Zhou
Journal:  Neurooncol Adv       Date:  2020-06-22

2.  MRI Characteristics of Primary Tumors and Metastatic Lesions in Molecular Subgroups of Pediatric Medulloblastoma: A Single-Center Study.

Authors:  D Mata-Mbemba; M Zapotocky; S Laughlin; M D Taylor; V Ramaswamy; C Raybaud
Journal:  AJNR Am J Neuroradiol       Date:  2018-03-15       Impact factor: 3.825

3.  Molecular correlates of cerebellar mutism syndrome in medulloblastoma.

Authors:  Rashad Jabarkheel; Nisreen Amayiri; Derek Yecies; Yuhao Huang; Sebastian Toescu; Liana Nobre; Donald J Mabbott; Sniya V Sudhakar; Prateek Malik; Suzanne Laughlin; Maisa Swaidan; Maysa Al Hussaini; Awni Musharbash; Geeta Chacko; Leni G Mathew; Paul G Fisher; Darren Hargrave; Ute Bartels; Uri Tabori; Stefan M Pfister; Kristian Aquilina; Michael D Taylor; Gerald A Grant; Eric Bouffet; Kshitij Mankad; Kristen W Yeom; Vijay Ramaswamy
Journal:  Neuro Oncol       Date:  2020-02-20       Impact factor: 12.300

4.  Computational Radiomics System to Decode the Radiographic Phenotype.

Authors:  Joost J M van Griethuysen; Andriy Fedorov; Chintan Parmar; Ahmed Hosny; Nicole Aucoin; Vivek Narayan; Regina G H Beets-Tan; Jean-Christophe Fillion-Robin; Steve Pieper; Hugo J W L Aerts
Journal:  Cancer Res       Date:  2017-11-01       Impact factor: 12.701

5.  Prognostic significance of clinical, histopathological, and molecular characteristics of medulloblastomas in the prospective HIT2000 multicenter clinical trial cohort.

Authors:  Torsten Pietsch; Rene Schmidt; Marc Remke; Andrey Korshunov; Volker Hovestadt; David T W Jones; Jörg Felsberg; Kerstin Kaulich; Tobias Goschzik; Marcel Kool; Paul A Northcott; Katja von Hoff; André O von Bueren; Carsten Friedrich; Martin Mynarek; Heyko Skladny; Gudrun Fleischhack; Michael D Taylor; Friedrich Cremer; Peter Lichter; Andreas Faldum; Guido Reifenberger; Stefan Rutkowski; Stefan M Pfister
Journal:  Acta Neuropathol       Date:  2014-05-04       Impact factor: 17.088

6.  Minimal methylation classifier (MIMIC): A novel method for derivation and rapid diagnostic detection of disease-associated DNA methylation signatures.

Authors:  E C Schwalbe; D Hicks; G Rafiee; M Bashton; H Gohlke; A Enshaei; S Potluri; J Matthiesen; M Mather; P Taleongpong; R Chaston; A Silmon; A Curtis; J C Lindsey; S Crosier; A J Smith; T Goschzik; F Doz; S Rutkowski; B Lannering; T Pietsch; S Bailey; D Williamson; S C Clifford
Journal:  Sci Rep       Date:  2017-10-18       Impact factor: 4.379

7.  Standardization of brain MR images across machines and protocols: bridging the gap for MRI-based radiomics.

Authors:  Alexandre Carré; Guillaume Klausner; Myriam Edjlali; Marvin Lerousseau; Jade Briend-Diop; Roger Sun; Samy Ammari; Sylvain Reuzé; Emilie Alvarez Andres; Théo Estienne; Stéphane Niyoteka; Enzo Battistella; Maria Vakalopoulou; Frédéric Dhermain; Nikos Paragios; Eric Deutsch; Catherine Oppenheim; Johan Pallud; Charlotte Robert
Journal:  Sci Rep       Date:  2020-07-23       Impact factor: 4.379

8.  The Image Biomarker Standardization Initiative: Standardized Quantitative Radiomics for High-Throughput Image-based Phenotyping.

Authors:  Alex Zwanenburg; Martin Vallières; Mahmoud A Abdalah; Hugo J W L Aerts; Vincent Andrearczyk; Aditya Apte; Saeed Ashrafinia; Spyridon Bakas; Roelof J Beukinga; Ronald Boellaard; Marta Bogowicz; Luca Boldrini; Irène Buvat; Gary J R Cook; Christos Davatzikos; Adrien Depeursinge; Marie-Charlotte Desseroit; Nicola Dinapoli; Cuong Viet Dinh; Sebastian Echegaray; Issam El Naqa; Andriy Y Fedorov; Roberto Gatta; Robert J Gillies; Vicky Goh; Michael Götz; Matthias Guckenberger; Sung Min Ha; Mathieu Hatt; Fabian Isensee; Philippe Lambin; Stefan Leger; Ralph T H Leijenaar; Jacopo Lenkowicz; Fiona Lippert; Are Losnegård; Klaus H Maier-Hein; Olivier Morin; Henning Müller; Sandy Napel; Christophe Nioche; Fanny Orlhac; Sarthak Pati; Elisabeth A G Pfaehler; Arman Rahmim; Arvind U K Rao; Jonas Scherer; Muhammad Musib Siddique; Nanna M Sijtsema; Jairo Socarras Fernandez; Emiliano Spezi; Roel J H M Steenbakkers; Stephanie Tanadini-Lang; Daniela Thorwarth; Esther G C Troost; Taman Upadhaya; Vincenzo Valentini; Lisanne V van Dijk; Joost van Griethuysen; Floris H P van Velden; Philip Whybra; Christian Richter; Steffen Löck
Journal:  Radiology       Date:  2020-03-10       Impact factor: 29.146

9.  A tailored molecular profiling programme for children with cancer to identify clinically actionable genetic alterations.

Authors:  Sally L George; Elisa Izquierdo; James Campbell; Eleni Koutroumanidou; Paula Proszek; Sabri Jamal; Deborah Hughes; Lina Yuan; Lynley V Marshall; Fernando Carceller; Julia C Chisholm; Sucheta Vaidya; Henry Mandeville; Paola Angelini; Ajla Wasti; Tomas Bexelius; Khin Thway; Susanne A Gatz; Matthew Clarke; Bissan Al-Lazikani; Giuseppe Barone; John Anderson; Deborah A Tweddle; David Gonzalez; Brian A Walker; Jack Barton; Sarita Depani; Jessica Eze; Saira W Ahmed; Lucas Moreno; Andrew Pearson; Janet Shipley; Chris Jones; Darren Hargrave; Thomas S Jacques; Michael Hubank; Louis Chesler
Journal:  Eur J Cancer       Date:  2019-09-19       Impact factor: 9.162

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  2 in total

Review 1.  Adult Medulloblastoma: Updates on Current Management and Future Perspectives.

Authors:  Enrico Franceschi; Caterina Giannini; Julia Furtner; Kristian W Pajtler; Sofia Asioli; Raphael Guzman; Clemens Seidel; Lidia Gatto; Peter Hau
Journal:  Cancers (Basel)       Date:  2022-07-29       Impact factor: 6.575

2.  Systematic analysis of MCM3 in pediatric medulloblastoma via multi-omics analysis.

Authors:  Liangliang Cao; Yang Zhao; Zhuangzhuag Liang; Jian Yang; Jiajia Wang; Shuangwei Tian; Qinhua Wang; Baocheng Wang; Heng Zhao; Feng Jiang; Jie Ma
Journal:  Front Mol Biosci       Date:  2022-09-05
  2 in total

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