Literature DB >> 33668387

Optimizing Calcium Detection Methods in Animal Systems: A Sandbox for Synthetic Biology.

Elizabeth S Li1, Margaret S Saha1.   

Abstract

Since the 1970s, the emergence and expansion of novel methods for calcium ion (Ca2+) detection have found diverse applications in vitro and in vivo across a series of model animal systems. Matched with advances in fluorescence imaging techniques, the improvements in the functional range and stability of various calcium indicators have significantly enhanced more accurate study of intracellular Ca2+ dynamics and its effects on cell signaling, growth, differentiation, and regulation. Nonetheless, the current limitations broadly presented by organic calcium dyes, genetically encoded calcium indicators, and calcium-responsive nanoparticles suggest a potential path toward more rapid optimization by taking advantage of a synthetic biology approach. This engineering-oriented discipline applies principles of modularity and standardization to redesign and interrogate endogenous biological systems. This review will elucidate how novel synthetic biology technologies constructed for eukaryotic systems can offer a promising toolkit for interfacing with calcium signaling and overcoming barriers in order to accelerate the process of Ca2+ detection optimization.

Entities:  

Keywords:  GECI; calcium dyes; calcium imaging; calcium indicators; synthetic biology

Year:  2021        PMID: 33668387      PMCID: PMC7996158          DOI: 10.3390/biom11030343

Source DB:  PubMed          Journal:  Biomolecules        ISSN: 2218-273X


  213 in total

1.  An Improved Whole-Cell Biosensor for the Discovery of Lignin-Transforming Enzymes in Functional Metagenomic Screens.

Authors:  Joe C H Ho; Sandip V Pawar; Steven J Hallam; Vikramaditya G Yadav
Journal:  ACS Synth Biol       Date:  2017-12-04       Impact factor: 5.110

2.  Timing of neurotransmission at fast synapses in the mammalian brain.

Authors:  B L Sabatini; W G Regehr
Journal:  Nature       Date:  1996-11-14       Impact factor: 49.962

3.  Nanoparticle PEBBLE sensors for quantitative nanomolar imaging of intracellular free calcium ions.

Authors:  Di Si; Tamir Epstein; Yong-Eun Koo Lee; Raoul Kopelman
Journal:  Anal Chem       Date:  2012-01-05       Impact factor: 6.986

4.  Rewiring human cellular input-output using modular extracellular sensors.

Authors:  Kelly A Schwarz; Nichole M Daringer; Taylor B Dolberg; Joshua N Leonard
Journal:  Nat Chem Biol       Date:  2016-12-12       Impact factor: 15.040

5.  Subcellular calcium measurements in mammalian cells using jellyfish photoprotein aequorin-based probes.

Authors:  Massimo Bonora; Carlotta Giorgi; Angela Bononi; Saverio Marchi; Simone Patergnani; Alessandro Rimessi; Rosario Rizzuto; Paolo Pinton
Journal:  Nat Protoc       Date:  2013-10-10       Impact factor: 13.491

6.  Imaging intraorganellar Ca2+ at subcellular resolution using CEPIA.

Authors:  Junji Suzuki; Kazunori Kanemaru; Kuniaki Ishii; Masamichi Ohkura; Yohei Okubo; Masamitsu Iino
Journal:  Nat Commun       Date:  2014-06-13       Impact factor: 14.919

7.  Ultrasensitive imaging of Ca2+ dynamics in pancreatic acinar cells of yellow cameleon-nano transgenic mice.

Authors:  Yusuke Oshima; Takeshi Imamura; Atsuko Shintani; Hiroko Kajiura-Kobayashi; Terumasa Hibi; Takeharu Nagai; Shigenori Nonaka; Tomomi Nemoto
Journal:  Int J Mol Sci       Date:  2014-11-03       Impact factor: 5.923

Review 8.  New insights into the role of mitochondrial calcium homeostasis in cell migration.

Authors:  Vincent Paupe; Julien Prudent
Journal:  Biochem Biophys Res Commun       Date:  2017-05-08       Impact factor: 3.575

9.  Fluorescence Resonant Energy Transfer-Based Quantum Dot Sensor for the Detection of Calcium Ions.

Authors:  Shreya Ghosh; Yinghua Chen; Anne George; Mitra Dutta; Michael A Stroscio
Journal:  Front Chem       Date:  2020-08-11       Impact factor: 5.221

Review 10.  Measuring calcium dynamics in living cells with genetically encodable calcium indicators.

Authors:  Janet E McCombs; Amy E Palmer
Journal:  Methods       Date:  2008-10-09       Impact factor: 3.608

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  5 in total

Review 1.  Encoding, transmission, decoding, and specificity of calcium signals in plants.

Authors:  Claudia Allan; Richard J Morris; Claudia-Nicole Meisrimler
Journal:  J Exp Bot       Date:  2022-06-02       Impact factor: 7.298

2.  Calcium imaging reveals depressive- and manic-phase-specific brain neural activity patterns in a murine model of bipolar disorder: a pilot study.

Authors:  Min Chen; Hongjun Tian; Guoyong Huang; Tao Fang; Xiaodong Lin; Jianmin Shan; Ziyao Cai; Gaungdong Chen; Suling Chen; Ce Chen; Jing Ping; Langlang Cheng; Chunmian Chen; Jingjing Zhu; Feifei Zhao; Deguo Jiang; Chuanxin Liu; Guangchuan Huang; Chongguang Lin; Chuanjun Zhuo
Journal:  Transl Psychiatry       Date:  2021-12-07       Impact factor: 6.222

3.  Fiber-based lactate recordings with fluorescence resonance energy transfer sensors by applying an magnetic resonance-informed correction of hemodynamic artifacts.

Authors:  Henriette Lambers; Lydia Wachsmuth; Dominik Thomas; Fawzi Boumezbeur; Vanessa Hoesker; Bruno Pradier; Cornelius Faber
Journal:  Neurophotonics       Date:  2022-05-09       Impact factor: 4.212

4.  Live-Cell Imaging of the Contractile Velocity and Transient Intracellular Ca2+ Fluctuations in Human Stem Cell-Derived Cardiomyocytes.

Authors:  Aviseka Acharya; Harshal Nemade; Krishna Rajendra Prasad; Khadija Khan; Jürgen Hescheler; Nick Blackburn; Ruth Hemmersbach; Symeon Papadopoulos; Agapios Sachinidis
Journal:  Cells       Date:  2022-04-09       Impact factor: 7.666

Review 5.  Genetically encoded fluorescent biosensors for GPCR research.

Authors:  Hyunbin Kim; In-Yeop Baek; Jihye Seong
Journal:  Front Cell Dev Biol       Date:  2022-09-29
  5 in total

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