Literature DB >> 18848629

Measuring calcium dynamics in living cells with genetically encodable calcium indicators.

Janet E McCombs1, Amy E Palmer.   

Abstract

Genetically encoded calcium indicators (GECIs) allow researchers to measure calcium dynamics in specific targeted locations within living cells. Such indicators enable dissection of the spatial and temporal control of calcium signaling processes. Here we review recent progress in the development of GECIs, highlighting which indicators are most appropriate for measuring calcium in specific organelles and localized domains in mammalian tissue culture cells. An overview of recent approaches that have been undertaken to ensure that the GECIs are minimally perturbed by the cellular environment is provided. Additionally, the procedures for introducing GECIs into mammalian cells, conducting calcium imaging experiments, and analyzing data are discussed. Because organelle-targeted indicators often pose an additional challenge, we underscore strategies for calibrating GECIs in these locations.

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Year:  2008        PMID: 18848629      PMCID: PMC2654717          DOI: 10.1016/j.ymeth.2008.09.015

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  28 in total

1.  Circular permutation and receptor insertion within green fluorescent proteins.

Authors:  G S Baird; D A Zacharias; R Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin.

Authors:  A Miyawaki; J Llopis; R Heim; J M McCaffery; J A Adams; M Ikura; R Y Tsien
Journal:  Nature       Date:  1997-08-28       Impact factor: 49.962

3.  Genetically encoded bright Ca2+ probe applicable for dynamic Ca2+ imaging of dendritic spines.

Authors:  Masamichi Ohkura; Masanori Matsuzaki; Haruo Kasai; Keiji Imoto; Junichi Nakai
Journal:  Anal Chem       Date:  2005-09-15       Impact factor: 6.986

Review 4.  A guide to choosing fluorescent proteins.

Authors:  Nathan C Shaner; Paul A Steinbach; Roger Y Tsien
Journal:  Nat Methods       Date:  2005-12       Impact factor: 28.547

5.  A FRET-based calcium biosensor with fast signal kinetics and high fluorescence change.

Authors:  Marco Mank; Dierk F Reiff; Nicola Heim; Michael W Friedrich; Alexander Borst; Oliver Griesbeck
Journal:  Biophys J       Date:  2005-12-09       Impact factor: 4.033

6.  Ca2+ shuttling between endoplasmic reticulum and mitochondria underlying Ca2+ oscillations.

Authors:  Kiyoaki Ishii; Kenzo Hirose; Masamitsu Iino
Journal:  EMBO Rep       Date:  2006-01-13       Impact factor: 8.807

7.  Bcl-2-mediated alterations in endoplasmic reticulum Ca2+ analyzed with an improved genetically encoded fluorescent sensor.

Authors:  Amy E Palmer; Can Jin; John C Reed; Roger Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-07       Impact factor: 11.205

8.  A high signal-to-noise Ca(2+) probe composed of a single green fluorescent protein.

Authors:  J Nakai; M Ohkura; K Imoto
Journal:  Nat Biotechnol       Date:  2001-02       Impact factor: 54.908

9.  Imaging cellular signals in the heart in vivo: Cardiac expression of the high-signal Ca2+ indicator GCaMP2.

Authors:  Yvonne N Tallini; Masamichi Ohkura; Bum-Rak Choi; Guangju Ji; Keiji Imoto; Robert Doran; Jane Lee; Patricia Plan; Jason Wilson; Hong-Bo Xin; Atsushi Sanbe; James Gulick; John Mathai; Jeffrey Robbins; Guy Salama; Junichi Nakai; Michael I Kotlikoff
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-13       Impact factor: 11.205

10.  Targeted recombinant aequorins: tools for monitoring [Ca2+] in the various compartments of a living cell.

Authors:  M Brini; P Pinton; T Pozzan; R Rizzuto
Journal:  Microsc Res Tech       Date:  1999-09-15       Impact factor: 2.769

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  43 in total

1.  Role of presenilins in neuronal calcium homeostasis.

Authors:  Hua Zhang; Suya Sun; An Herreman; Bart De Strooper; Ilya Bezprozvanny
Journal:  J Neurosci       Date:  2010-06-23       Impact factor: 6.167

2.  Using Spinach-based sensors for fluorescence imaging of intracellular metabolites and proteins in living bacteria.

Authors:  Rita L Strack; Wenjiao Song; Samie R Jaffrey
Journal:  Nat Protoc       Date:  2013-12-19       Impact factor: 13.491

3.  Detection of differentially regulated subsarcolemmal calcium signals activated by vasoactive agonists in rat pulmonary artery smooth muscle cells.

Authors:  Krishna P Subedi; Omkar Paudel; James S K Sham
Journal:  Am J Physiol Cell Physiol       Date:  2013-12-18       Impact factor: 4.249

4.  Mitochondrial matrix Ca²⁺ accumulation regulates cytosolic NAD⁺/NADH metabolism, protein acetylation, and sirtuin expression.

Authors:  Raluca Marcu; Brian M Wiczer; Christopher K Neeley; Brian J Hawkins
Journal:  Mol Cell Biol       Date:  2014-05-27       Impact factor: 4.272

5.  Reflective lens-free imaging on high-density silicon microelectrode arrays for monitoring and evaluation of in vitro cardiac contractility.

Authors:  Thomas Pauwelyn; Richard Stahl; Lakyn Mayo; Xuan Zheng; Andy Lambrechts; Stefan Janssens; Liesbet Lagae; Veerle Reumers; Dries Braeken
Journal:  Biomed Opt Express       Date:  2018-03-22       Impact factor: 3.732

6.  Dysregulation of mitochondrial calcium signaling and superoxide flashes cause mitochondrial genomic DNA damage in Huntington disease.

Authors:  Jiu-Qiang Wang; Qian Chen; Xianhua Wang; Qiao-Chu Wang; Yun Wang; He-Ping Cheng; Caixia Guo; Qinmiao Sun; Quan Chen; Tie-Shan Tang
Journal:  J Biol Chem       Date:  2012-12-17       Impact factor: 5.157

Review 7.  Fast kinetics of calcium signaling and sensor design.

Authors:  Shen Tang; Florence Reddish; You Zhuo; Jenny J Yang
Journal:  Curr Opin Chem Biol       Date:  2015-07-04       Impact factor: 8.822

8.  Optimization of direct fibroblast reprogramming to cardiomyocytes using calcium activity as a functional measure of success.

Authors:  Russell C Addis; Jamie L Ifkovits; Filipa Pinto; Lori D Kellam; Paul Esteso; Stacey Rentschler; Nicolas Christoforou; Jonathan A Epstein; John D Gearhart
Journal:  J Mol Cell Cardiol       Date:  2013-04-13       Impact factor: 5.000

9.  Aequorin-based luminescence imaging reveals stimulus- and tissue-specific Ca2+ dynamics in Arabidopsis plants.

Authors:  Xiaohong Zhu; Ying Feng; Gaimei Liang; Na Liu; Jian-Kang Zhu
Journal:  Mol Plant       Date:  2013-01-31       Impact factor: 13.164

10.  Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.

Authors:  Lin Tian; S Andrew Hires; Tianyi Mao; Daniel Huber; M Eugenia Chiappe; Sreekanth H Chalasani; Leopoldo Petreanu; Jasper Akerboom; Sean A McKinney; Eric R Schreiter; Cornelia I Bargmann; Vivek Jayaraman; Karel Svoboda; Loren L Looger
Journal:  Nat Methods       Date:  2009-11-08       Impact factor: 28.547

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