Literature DB >> 33666709

Drug properties and host factors contribute to biochemical presentation of drug-induced liver injury: a prediction model from a machine learning approach.

Andres Gonzalez-Jimenez1, Ayako Suzuki2,3, Minjun Chen4, Kristin Ashby4, Ismael Alvarez-Alvarez5, Raul J Andrade5,6, M Isabel Lucena7,8,9.   

Abstract

Drug-induced liver injury (DILI) presentation varies biochemically and histologically. Certain drugs present quite consistent injury patterns, i.e., DILI signatures. In contrast, others are manifested as broader types of liver injury. The variety of DILI presentations by a single drug suggests that both drugs and host factors may contribute to the phenotype. However, factors determining the DILI types have not been yet elucidated. Identifying such factors may help to accurately predict the injury types based on drugs and host information and assist the clinical diagnosis of DILI. Using prospective DILI registry datasets, we sought to explore and validate the associations of biochemical injury types at the time of DILI recognition with comprehensive information on drug properties and host factors. Random forest models identified a set of drug properties and host factors that differentiate hepatocellular from cholestatic damage with reasonable accuracy (69-84%). A simplified logistic regression model developed for practical use, consisting of patient's age, drug's lipoaffinity, and hybridization ratio, achieved a fair prediction (68-74%), but suggested potential clinical usability, computing the likelihood of liver injury type based on two properties of drugs taken by a patient and patient's age. In summary, considering both drug and host factors in evaluating DILI risk and phenotypes open an avenue for future DILI research and aid in the refinement of causality assessment.

Entities:  

Keywords:  Bioinformatics; Cholestatic; Hepatocellular; Hepatotoxicity; Interactions; Machine learning; Phenotype

Mesh:

Substances:

Year:  2021        PMID: 33666709     DOI: 10.1007/s00204-021-03013-3

Source DB:  PubMed          Journal:  Arch Toxicol        ISSN: 0340-5761            Impact factor:   5.153


  23 in total

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Authors:  C Bénichou
Journal:  J Hepatol       Date:  1990-09       Impact factor: 25.083

2.  Quantitative structure-activity relationship models for predicting drug-induced liver injury based on FDA-approved drug labeling annotation and using a large collection of drugs.

Authors:  Minjun Chen; Huixiao Hong; Hong Fang; Reagan Kelly; Guangxu Zhou; Jürgen Borlak; Weida Tong
Journal:  Toxicol Sci       Date:  2013-08-31       Impact factor: 4.849

3.  BDDCS applied to over 900 drugs.

Authors:  Leslie Z Benet; Fabio Broccatelli; Tudor I Oprea
Journal:  AAPS J       Date:  2011-08-05       Impact factor: 4.009

4.  Drug-induced liver injury: an analysis of 461 incidences submitted to the Spanish registry over a 10-year period.

Authors:  Raúl J Andrade; M Isabel Lucena; M Carmen Fernández; Gloria Pelaez; Ketevan Pachkoria; Elena García-Ruiz; Beatriz García-Muñoz; Rocio González-Grande; Angeles Pizarro; José Antonio Durán; Manuel Jiménez; Luis Rodrigo; Manuel Romero-Gomez; José María Navarro; Ramón Planas; Joan Costa; Africa Borras; Aina Soler; Javier Salmerón; Rafael Martin-Vivaldi
Journal:  Gastroenterology       Date:  2005-08       Impact factor: 22.682

5.  BDDCS class prediction for new molecular entities.

Authors:  Fabio Broccatelli; Gabriele Cruciani; Leslie Z Benet; Tudor I Oprea
Journal:  Mol Pharm       Date:  2012-02-07       Impact factor: 4.939

Review 6.  Drug-induced liver injury.

Authors:  Raul J Andrade; Naga Chalasani; Einar S Björnsson; Ayako Suzuki; Gerd A Kullak-Ublick; Paul B Watkins; Harshad Devarbhavi; Michael Merz; M Isabel Lucena; Neil Kaplowitz; Guruprasad P Aithal
Journal:  Nat Rev Dis Primers       Date:  2019-08-22       Impact factor: 52.329

Review 7.  Drug-induced liver injury: Interactions between drug properties and host factors.

Authors:  Minjun Chen; Ayako Suzuki; Jürgen Borlak; Raúl J Andrade; M Isabel Lucena
Journal:  J Hepatol       Date:  2015-04-22       Impact factor: 25.083

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Authors:  G Danan; C Benichou
Journal:  J Clin Epidemiol       Date:  1993-11       Impact factor: 6.437

Review 9.  Drug induced liver injury: an update.

Authors:  Miren Garcia-Cortes; Mercedes Robles-Diaz; Camilla Stephens; Aida Ortega-Alonso; M Isabel Lucena; Raúl J Andrade
Journal:  Arch Toxicol       Date:  2020-08-27       Impact factor: 5.153

Review 10.  The Latin American DILI Registry Experience: A Successful Ongoing Collaborative Strategic Initiative.

Authors:  Fernando Bessone; Nelia Hernandez; M Isabel Lucena; Raúl J Andrade
Journal:  Int J Mol Sci       Date:  2016-02-29       Impact factor: 5.923

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  1 in total

Review 1.  Preclinical models of idiosyncratic drug-induced liver injury (iDILI): Moving towards prediction.

Authors:  Antonio Segovia-Zafra; Daniel E Di Zeo-Sánchez; Carlos López-Gómez; Zeus Pérez-Valdés; Eduardo García-Fuentes; Raúl J Andrade; M Isabel Lucena; Marina Villanueva-Paz
Journal:  Acta Pharm Sin B       Date:  2021-11-18       Impact factor: 11.413

  1 in total

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