Literature DB >> 33659444

A Protocol for Simple, Rapid, and Direct Detection of SARS-CoV-2 from clinical samples, using Reverse Transcribed Loop-Mediated Isothermal Amplification (RT-LAMP).

Rawi Naddaf1, Nadav Ben-Assa1, Tal Gefen1, Tal Capucha1,2, Haitham Hajjo1,3,4, Noa Mandelbaum1, Lilach Elbaum1, Shai Kaplan5, Assaf Rotem6, Michal Chowers7,8, Moran Szwarcwort-Cohen9, Mical Paul10, Naama Geva-Zatorsky1,11.   

Abstract

SARS-CoV-2 has quickly spread all around the globe causing illness and wide damages. Most countries were unprepared for such a rapid spread and crisis. This led to various strategies for effective control of the new pandemic. A key aspect in all countries was to effectively test the population for the virus. Most countries chose a lockdown strategy in which many workplaces and activities are completely closed, leading to substantial economy costs. Here, we present a protocol we recently developed that allows rapid and simple detection of SARS-CoV-2 for the large population, eliminating costs and involvement of professional teams and laboratories. This protocol is based on Reverse Transcribed Loop-Mediated Isothermal Amplification (RT-LAMP). We tested this protocol directly on patient samples, both nasal and throat clinical swabs as well as saliva. Notably, this protocol is simple, cheap and can be easily applied to other pathogens as well.
Copyright © 2020 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  Colorimetric; Covid-19; Isothermal; Pandemic; RT-LAMP; Rapid molecular Detection; SARS-CoV-2; Saliva.

Year:  2020        PMID: 33659444      PMCID: PMC7842347          DOI: 10.21769/BioProtoc.3789

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  6 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  A multiplexed RT-LAMP assay for detection of group M HIV-1 in plasma or whole blood.

Authors:  Kelly A Curtis; Daphne Morrison; Donna L Rudolph; Anupama Shankar; Laura S P Bloomfield; William M Switzer; S Michele Owen
Journal:  J Virol Methods       Date:  2018-02-21       Impact factor: 2.014

3.  Rapid and sensitive detection of Zika virus by reverse transcription loop-mediated isothermal amplification.

Authors:  Xuan Wang; Fenggui Yin; Yuhai Bi; Gong Cheng; Jing Li; Lidan Hou; Yunlong Li; Baozhi Yang; Wenjun Liu; Limin Yang
Journal:  J Virol Methods       Date:  2016-10-25       Impact factor: 2.014

4.  Rapid Detection of COVID-19 Coronavirus Using a Reverse Transcriptional Loop-Mediated Isothermal Amplification (RT-LAMP) Diagnostic Platform.

Authors:  Lin Yu; Shanshan Wu; Xiaowen Hao; Xue Dong; Lingling Mao; Vicent Pelechano; Wei-Hua Chen; Xiushan Yin
Journal:  Clin Chem       Date:  2020-07-01       Impact factor: 8.327

5.  Direct on-the-spot detection of SARS-CoV-2 in patients.

Authors:  Nadav Ben-Assa; Rawi Naddaf; Tal Gefen; Tal Capucha; Haitham Hajjo; Noa Mandelbaum; Lilach Elbaum; Peter Rogov; Daniel A King; Shai Kaplan; Assaf Rotem; Michal Chowers; Moran Szwarcwort-Cohen; Mical Paul; Naama Geva-Zatorsky
Journal:  Exp Biol Med (Maywood)       Date:  2020-07-16

6.  Direct RT-qPCR detection of SARS-CoV-2 RNA from patient nasopharyngeal swabs without an RNA extraction step.

Authors:  Emily A Bruce; Meei-Li Huang; Garrett A Perchetti; Scott Tighe; Pheobe Laaguiby; Jessica J Hoffman; Diana L Gerrard; Arun K Nalla; Yulun Wei; Alexander L Greninger; Sean A Diehl; David J Shirley; Debra G B Leonard; Christopher D Huston; Beth D Kirkpatrick; Julie A Dragon; Jessica W Crothers; Keith R Jerome; Jason W Botten
Journal:  PLoS Biol       Date:  2020-10-02       Impact factor: 8.029

  6 in total

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