| Literature DB >> 33658761 |
Shi-Han Feng1, Bin Zhao1, Xue Zhan2, Retsepile Motanyane2, Shu-Mei Wang2, Ao Li3.
Abstract
PURPOSE: This study aimed to reveal Danggui Buxue Decoction (DBD) candidate targets and mechanisms in the treatment of metastatic colon cancer (MCC), using network pharmacology-based analyses and experimental validation.Entities:
Keywords: Danggui Buxue Decoction; metastatic tumor; network pharmacology; perioperative period; primary tumor
Mesh:
Substances:
Year: 2021 PMID: 33658761 PMCID: PMC7917330 DOI: 10.2147/DDDT.S293046
Source DB: PubMed Journal: Drug Des Devel Ther ISSN: 1177-8881 Impact factor: 4.162
The Chemical Compounds and ADME Parameters of DBD
| PubChem CID | Compound Name | Canonical SMILES | OB (%) | DL | Origin |
|---|---|---|---|---|---|
| 64971 | Mairin | CC(=C)C1CCC2(C1C3CCC4C5(CCC(C(C5CCC4(C3(CC2)C)C)(C)C)O)C)C(=O)O | 55.38 | 0.78 | HQ |
| 5318869 | Jaranol | COC1=CC(=C2C(=C1)OC(=C(C2=O)OC)C3=CC=C(C=C3)O)O | 50.83 | 0.29 | HQ |
| 73299 | Hederagenin | CC1(CCC2(CCC3(C(=CCC4C3(CCC5C4(CCC(C5(C)CO)O)C)C)C2C1)C)C(=O)O)C | 36.91 | 0.75 | HQ |
| 15976101 | 24-propylcholesterol | CCCC(CCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C)C(C)C | 36.23 | 0.78 | HQ |
| 5281654 | Isorhamnetin | COC1=C(C=CC(=C1)C2=C(C(=O)C3=C(C=C(C=C3O2)O)O)O)O | 49.6 | 0.31 | HQ |
| 15689655 | 3,9-di-O-methylnissolin | COC1=CC2=C(C=C1)C3C(CO2)C4=C(O3)C(=C(C=C4)OC)OC | 53.74 | 0.48 | HQ |
| 15689654 | 5ʹ-hydroxyiso-muronulatol-2ʹ,5ʹ-di-O-glucoside | COC1=C(C=C(C(=C1OC)OC2C(C(C(C(O2)CO)O)O)O)C3CC4=C(C=C(C=C4)O)OC3)OC5C(C(C(C(O5)CO)O)O)O | 41.72 | 0.69 | HQ |
| 15689652 | 7-O-Methylisomucronulatol | COC1=CC2=C(CC(CO2)C3=C(C(=C(C=C3)OC)OC)O)C=C1 | 74.69 | 0.3 | HQ |
| 101679160 | 9,10-dimethoxypterocarpan-3-O-β-D-glucoside | COC1=C(C2=C(C=C1)C3COC4=C(C3O2)C=CC(=C4)OC5C(C(C(C(O5)CO)O)O)O)OC | 36.74 | 0.92 | HQ |
| 14077830 | Methylnissolin | COC1=C(C2=C(C=C1)C3COC4=C(C3O2)C=CC(=C4)O)OC | 64.26 | 0.42 | HQ |
| 108213 | Bifendate | COC1=C2C(=C(C(=C1)C(=O)OC)C3=C4C(=C(C=C3C(=O)OC)OC)OCO4)OCO2 | 31.1 | 0.67 | HQ |
| 5,280378 | formononetin | COC1=CC=C(C=C1)C2=COC3=C(C2=O)C=CC(=C3)O | 69.67 | 0.21 | HQ |
| 160767 | isoflavanone | C1C(C(=O)C2=CC=CC=C2O1)C3=CC=CC=C3 | 109.99 | 0.3 | HQ |
| 5,280448 | Calycosin | COC1=C(C=C(C=C1)C2=COC3=C(C2=O)C=CC(=C3)O)O | 47.75 | 0.24 | HQ |
| 5280863 | kaempferol | C1=CC(=CC=C1C2=C(C(=O)C3=C(C=C(C=C3O2)O)O)O)O | 41.88 | 0.24 | HQ |
| 135398658 | Folic acid | C1=CC(=CC=C1C(=O)NC(CCC(=O)O)C(=O)O)NCC2=CN=C3C(=N2)C(=O)NC(=N3)N | 68.96 | 0.71 | HQ |
| 10380176 | (3R)-3-(2-hydroxy-3,4-dimethoxyphenyl)chroman-7-ol | COC1=C(C(=C(C=C1)C2CC3=C(C=C(C=C3)O)OC2)O)OC | 67.67 | 0.26 | HQ |
| 15689653 | isomucronulatol-7,2ʹ-di-O-glucosiole | COC1=C(C(=C(C=C1)C2CC3=C(C=C(C=C3)OC4C(C(C(C(O4)CO)O)O)O)OC2)OC5C(C(C(C(O5)CO)O)O)O)OC | 49.28 | 0.62 | HQ |
| 5316760 | 1,7-Dihydroxy-3,9-dimethoxy pterocarpene | COC1=CC(=C2C(=C1)OCC3=C2OC4=CC(=CC(=C34)O)OC)O | 39.05 | 0.48 | HQ |
| 5280343 | quercetin | C1=CC(=C(C=C1C2=C(C(=O)C3=C(C=C(C=C3O2)O)O)O)O)O | 46.43 | 0.28 | HQ |
| 2782115 | Astragalus polysaccharide | C1=CC(=CC=C1C2=CSC(=N2)CCl)[N+](=O)[O-] | / | / | HQ |
| 5488387 | Astragaloside | COC1=C(C=CC(=C1)C2=C(C(=O)C3=C(C=C(C=C3O2)O)O)OC4C(C(C(C(O4)COC5C(C(C(C(O5)CO)O)O)O)O)O)O)O | / | / | HQ |
| 441905 | Astragaloside III | CC1(C(CCC23C1C(CC4C2(C3)CCC5(C4(CC(C5C6(CCC(O6)C(C)(C)O)C)O)C)C)O)OC7C(C(C(CO7)O)O)OC8C(C(C(C(O8)CO)O)O)O)C | 31.83 | 0.10 | HQ |
| 13943297 | Astragaloside IV | CC1(C(CCC23C1C(CC4C2(C3)CCC5(C4(CC(C5C6(CCC(O6)C(C)(C)O)C)O)C)C)OC7C(C(C(C(O7)CO)O)O)O)OC8C(C(C(CO8)O)O)O)C | 22.50 | 0.15 | HQ |
| 222284 | beta-sitosterol | CCC(CCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C)C(C)C | 36.91 | 0.75 | DG |
| 5280794 | Stigmasterol | CCC(C=CC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C)C(C)C | 43.83 | 0.76 | DG |
| 11559 | alpha-Angelica lactone | CC1=CCC(=O)O1 | 62.53 | 0.01 | DG |
| 445858 | Ferulic acid | COC1=C(C=CC(=C1)C=CC(=O)O)O | 40.43 | 0.06 | DG |
Note: / represents there was no corresponding values of OB and DL.
Figure 1Venn diagram of common targets in DBD and MCC.
Figure 2DBD-compound-target-MCC network. All nodes were visualized in degree value, the larger the node, the darker the color and the higher the degree value. In this network, the red diamonds represent candidate targets of DBD against MCC, the orange and claybank octagons represent active compounds in HQ and DG, the green ellipse represent disease, while the remaining golden squares represent HQ and DG.
The Topological Parameter Analysis of Top 13 Compounds in DBD
| Number | Compound | Degree Centrality | Betweenness Centrality | Closeness Centrality |
|---|---|---|---|---|
| 1 | Quercetin | 49 | 0.12 | 0.57 |
| 2 | Beta-sitosterol | 33 | 0.06 | 0.49 |
| 3 | Ferulic acid | 31 | 0.06 | 0.49 |
| 4 | Stigmasterol | 28 | 0.04 | 0.47 |
| 5 | Hederagenin | 27 | 0.03 | 0.46 |
| 6 | Jaranol | 26 | 0.03 | 0.46 |
| 7 | Methylnissolin | 25 | 0.03 | 0.46 |
| 8 | Formononetin | 25 | 0.02 | 0.45 |
| 9 | Calycosin | 24 | 0.02 | 0.45 |
| 10 | Kaempferol | 23 | 0.03 | 0.45 |
| 11 | 3,9-di-O-methylnissolin | 19 | 0.02 | 0.43 |
| 12 | 24-propylcholesterol | 19 | 0.02 | 0.43 |
| 13 | 7-O-methylisomucronulatol | 17 | 0.01 | 0.42 |
Figure 3The construction of protein-protein interaction network. (A) Protein-Protein interaction network. Edges represent protein-protein interactions, edge thickness indicates the strength of data support, the larger the node, the higher the degree value. Golden circles represent the targets that interact with CASP3. (B) Common Targets-bar plot diagram. X-axis represents the number of nodes connected and Y-axis represents the target gene symbol.
Parameters of the Top 30 Genes in the PPI Network
| Number | Gene | Degree | Betweenness Centrality | Closeness Centrality | Connected Nodes |
|---|---|---|---|---|---|
| 1 | PTGS2 | 35 | 0.10 | 0.72 | 35 |
| 2 | JUN | 35 | 0.06 | 0.72 | 35 |
| 3 | EGFR | 34 | 0.08 | 0.71 | 34 |
| 4 | ESR1 | 33 | 0.07 | 0.70 | 33 |
| 5 | CASP3 | 30 | 0.05 | 0.67 | 30 |
| 6 | STAT3 | 29 | 0.04 | 0.66 | 29 |
| 7 | MMP9 | 26 | 0.05 | 0.64 | 26 |
| 8 | RELA | 25 | 0.03 | 0.63 | 25 |
| 9 | PPARG | 25 | 0.05 | 0.64 | 25 |
| 10 | AR | 24 | 0.05 | 0.62 | 24 |
| 11 | AHR | 23 | 0.02 | 0.62 | 23 |
| 12 | PGR | 22 | 0.03 | 0.61 | 22 |
| 13 | MMP2 | 21 | 0.01 | 0.60 | 21 |
| 14 | CYP1A1 | 19 | 0.03 | 0.59 | 19 |
| 15 | CYP19A1 | 18 | 0.02 | 0.59 | 18 |
| 16 | NCOA1 | 17 | 0.02 | 0.57 | 17 |
| 17 | CASP8 | 16 | 0.01 | 0.57 | 16 |
| 18 | NCOA2 | 16 | 0.02 | 0.56 | 16 |
| 19 | NOS2 | 15 | 0.02 | 0.55 | 15 |
| 20 | APP | 15 | 0.05 | 0.57 | 15 |
| 21 | PARP1 | 15 | 0.01 | 0.55 | 15 |
| 22 | ESR2 | 15 | 0.01 | 0.56 | 15 |
| 23 | ABCB1 | 14 | 0.02 | 0.55 | 14 |
| 24 | MET | 13 | 0.00 | 0.54 | 13 |
| 25 | CASP9 | 13 | 0.00 | 0.54 | 13 |
| 26 | PLAU | 12 | 0.01 | 0.54 | 12 |
| 27 | MMP1 | 12 | 0.00 | 0.55 | 12 |
| 28 | PPARA | 12 | 0.01 | 0.53 | 12 |
| 29 | RXRA | 12 | 0.01 | 0.51 | 12 |
| 30 | TLR9 | 11 | 0.00 | 0.52 | 11 |
Figure 4GO enrichment analysis. Different colors represent different clusters. (A) Terms of enriched biological processes on common targets. X-axis represents the percentage of the target genes versus the background genes in each term, Y-axis represents the name of biological processes, the red **Represents the number of enriched target genes. (B) Percentage of each cluster. The name of each term represents the leading term based on the highest significance value in each cluster.
Figure 5KEGG pathway enrichment dot-plot diagram. The top 30 signaling pathways regulated by DBD. X-axis represents the ratio of enriched target genes/background genes. Y-axis represents the term of enriched pathways. The sizes of the dots indicate the number of target genes in a certain pathway, and the colors of the dots reflect the different values of p.adjust.
Figure 6DBD inhibited the growth of metastatic tumor. (A) Growth curve of metastatic tumor. (B) Metastatic tumor weight. All data was presented as mean ± standard deviation, ***p<0.001, ****p<0.0001.
Figure 7Histopathological examination. HE staining of metastatic tumor. Representative image for HE staining of tumor sections from groups R, NR, DBD I and DBD II at 400x magnification power.
Figure 8DBD inhibited the growth of metastatic tumor through inducing cell apoptosis. (A) The effect of DBD on metastatic tumor was analyzed by Western blot. Figures (B and C, E and F) showed the expression of Bax, Bcl2, Cas3 and C-cas3 in metastatic tumor among R, NR, DBD I and DBD II groups, with β-actin as internal control. (D) Western blot analysis showed the ratio of Bax/Bcl2 in Metastatic tumor among groups R, NR, DBD I and DBD II. All data was presented as mean ± standard deviation. (*p<0.05, **p<0.01, ***p<0.001, ****p<0.0001).