Literature DB >> 33654892

flySAM Transgenic CRISPRa System Manual.

Yu Jia1, Da Shen1, Xia Wang1, Jin Sun1, Ping Peng1, Rong-Gang Xu1, Bowen Xu1, Jian-Quan Ni1,2.   

Abstract

Powerful and general methods that can enhance gene expression are useful to systematically study gene function. To date, compared with the methods in generating loss-of-function mutants, methods to achieve gain-of-function are limited. The entire field in Drosophila has relied heavily on the Gal4/UAS:cDNA overexpression system developed over two decades ago. It is laborious and expensive to clone the coding DNA sequence (CDS) of a gene, especially those of large size. In addition, side effects of this method are often observed because of the ectopic expression. Also, simultaneous activation of two genes with the traditional method is often time-consuming, and few are achievable for three or more genes. In this protocol, we describe how to build an effective and convenient targeting activator system, flySAM, to activate endogenous genes in Drosophila melanogaster based on the structure-guided engineering of CRISPR-Cas9 complex.
Copyright © 2019 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  CRISPR-Cas nuclease; CRISPRa; Drosophila; dCas9; flySAM

Year:  2019        PMID: 33654892      PMCID: PMC7854103          DOI: 10.21769/BioProtoc.3147

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  8 in total

1.  In Vivo Transcriptional Activation Using CRISPR/Cas9 in Drosophila.

Authors:  Shuailiang Lin; Ben Ewen-Campen; Xiaochun Ni; Benjamin E Housden; Norbert Perrimon
Journal:  Genetics       Date:  2015-08-05       Impact factor: 4.562

2.  Optimized gene editing technology for Drosophila melanogaster using germ line-specific Cas9.

Authors:  Xingjie Ren; Jin Sun; Benjamin E Housden; Yanhui Hu; Charles Roesel; Shuailiang Lin; Lu-Ping Liu; Zhihao Yang; Decai Mao; Lingzhu Sun; Qujie Wu; Jun-Yuan Ji; Jianzhong Xi; Stephanie E Mohr; Jiang Xu; Norbert Perrimon; Jian-Quan Ni
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-04       Impact factor: 11.205

3.  Optimized strategy for in vivo Cas9-activation in Drosophila.

Authors:  Ben Ewen-Campen; Donghui Yang-Zhou; Vitória R Fernandes; Delfina P González; Lu-Ping Liu; Rong Tao; Xingjie Ren; Jin Sun; Yanhui Hu; Jonathan Zirin; Stephanie E Mohr; Jian-Quan Ni; Norbert Perrimon
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-14       Impact factor: 11.205

4.  Next-generation CRISPR/Cas9 transcriptional activation in Drosophila using flySAM.

Authors:  Yu Jia; Rong-Gang Xu; Xingjie Ren; Ben Ewen-Campen; Rajendhran Rajakumar; Jonathan Zirin; Donghui Yang-Zhou; Ruibao Zhu; Fang Wang; Decai Mao; Ping Peng; Huan-Huan Qiao; Xia Wang; Lu-Ping Liu; Bowen Xu; Jun-Yuan Ji; Qingfei Liu; Jin Sun; Norbert Perrimon; Jian-Quan Ni
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-16       Impact factor: 11.205

5.  A genome-scale shRNA resource for transgenic RNAi in Drosophila.

Authors:  Jian-Quan Ni; Rui Zhou; Benjamin Czech; Lu-Ping Liu; Laura Holderbaum; Donghui Yang-Zhou; Hye-Seok Shim; Rong Tao; Dominik Handler; Phillip Karpowicz; Richard Binari; Matthew Booker; Julius Brennecke; Lizabeth A Perkins; Gregory J Hannon; Norbert Perrimon
Journal:  Nat Methods       Date:  2011-04-03       Impact factor: 28.547

6.  Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex.

Authors:  Silvana Konermann; Mark D Brigham; Alexandro E Trevino; Julia Joung; Omar O Abudayyeh; Clea Barcena; Patrick D Hsu; Naomi Habib; Jonathan S Gootenberg; Hiroshi Nishimasu; Osamu Nureki; Feng Zhang
Journal:  Nature       Date:  2014-12-10       Impact factor: 49.962

Review 7.  Beyond editing: repurposing CRISPR-Cas9 for precision genome regulation and interrogation.

Authors:  Antonia A Dominguez; Wendell A Lim; Lei S Qi
Journal:  Nat Rev Mol Cell Biol       Date:  2015-12-16       Impact factor: 94.444

8.  An efficient and multiple target transgenic RNAi technique with low toxicity in Drosophila.

Authors:  Huan-Huan Qiao; Fang Wang; Rong-Gang Xu; Jin Sun; Ruibao Zhu; Decai Mao; Xingjie Ren; Xia Wang; Yu Jia; Ping Peng; Da Shen; Lu-Ping Liu; Zhijie Chang; Guirong Wang; Shao Li; Jun-Yuan Ji; Qingfei Liu; Jian-Quan Ni
Journal:  Nat Commun       Date:  2018-10-08       Impact factor: 14.919

  8 in total

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