| Literature DB >> 33649882 |
Lorenzo Ugga1, Teresa Perillo1, Renato Cuocolo2, Arnaldo Stanzione1, Valeria Romeo1, Roberta Green1, Valeria Cantoni1, Arturo Brunetti1.
Abstract
PURPOSE: To systematically review and evaluate the methodological quality of studies using radiomics for diagnostic and predictive purposes in patients with intracranial meningioma. To perform a meta-analysis of machine learning studies for the prediction of intracranial meningioma grading from pre-operative brain MRI.Entities:
Keywords: Machine learning; Magnetic resonance imaging; Meningioma; Meta-analysis; Systematic review
Year: 2021 PMID: 33649882 PMCID: PMC8295153 DOI: 10.1007/s00234-021-02668-0
Source DB: PubMed Journal: Neuroradiology ISSN: 0028-3940 Impact factor: 2.804
Overview of radiomics quality score items and mode of the respective scores in the reviewed studies
| RQS checkpoint | RQS item number and name | Description and (points) | Mode |
|---|---|---|---|
| First | Item 1: image protocol quality | Well-documented protocol (+1) AND/OR publicly available protocol (+1) | 1 |
| Second | Item 2: multiple segmentation | Testing feature robustness to segmentation variability, e.g., different physicians/algorithms/software (+1) | 0 |
| Item 3: phantom study | Testing feature robustness to scanner variability, e.g., different vendors/scanners (+1) | 0 | |
| Item 4: multiple time points | Testing feature robustness to temporal variability, e.g., organ movement/expansion/shrinkage (+1) | 0 | |
| Third | Item 5: feature reduction | Either feature reduction OR adjustment for multiple testing is implemented (+ 3); otherwise, (−3) | 3 |
| Item 6: multivariable analysis | Non-radiomic feature are included in/considered for model building (+1) | 0 | |
| Item 7: Biological correlates | Detecting and discussing correlation of biology and radiomic features (+1) | 0 | |
| Item 8: cut-off analysis | Determining risk groups by either median, pre-defined cut-off, or continuous risk variable (+1) | 0 | |
| Item 9: discrimination statistics | Discrimination statistic and its statistical significance are reported (+ 1); a resampling technique is also applied (+1) | 2 | |
| Item 10: calibration statistics | Calibration statistic and its statistical significance are reported (+ 1); a resampling technique is also applied (+1) | 0 | |
| Item 11: prospective design | Prospective validation of a radiomics signature in an appropriate trial (+7) | 0 | |
| Item 12: validation | Validation is missing (−5) OR internal validation (+2) OR external validation on single dataset from one institute (+3) OR external validation on two datasets from two distinct institutes (+4) OR validation of a previously published signature (+4) validation is based on three or more datasets from distinct institutes (+5) | 2 | |
| Item 13: comparison to “gold standard” | Evaluating model’s agreement with/superiority to the current “gold standard” (+2) | 0 | |
| Item 14: potential clinical application | Discussing model applicability in a clinical setting (+2). | 2 | |
| Item 15: cost-effectiveness analysis | Performing a cost-effectiveness of the clinical application (+1) | 0 | |
| Item 16: open science and data | Open source scans (+1) AND/OR open source segmentations (+1) AND/OR open source code (+1) AND/OR open source representative features and segmentations (+1) | 0 |
RQS radiomics quality score
Fig. 1Study selection process flowchart
Overview of study aim, ML method, and performance for the included studies
| Authors | Study aim | ML methodology | Performance |
|---|---|---|---|
| AlKubeyyer et al. 2020 [ | Development of a computer-aided detection of the meningioma tumor firmness | • Support vector machine • k-nearest neighbor | • F-score=0.95 • Balanced accuracy= 0.87 • AUC=0.87 |
| Arokia Jesu Prabhu et al. 2018 [ | Automatic classification of parasagittal meningioma | Support vector machine | Accuracy= 0.92 |
| Chen et al. 2019 [ | Automatic classification of meningiomas | • Linear discriminant analysis • Support vector machine | Accuracy=0.76 |
| Chu et al. 2020 [ | Prediction of meningiomas grade | Logistic regression | • Accuracy= 0.95 (training group) and 0.93 (test group) • Sensitivity= 0.94 training group) and 0.92 (test group) |
| Florez et al. 2018 [ | Differentiation of vasogenic from tumor cell infiltration edema for radiotherapy | Linear regression | AUC>0.71 |
| Hamerla et al. 2019 [ | Differentiation of low grade from high grade meningioma | • Random forest • Extreme gradient boosting • Support vector machine • Multilayer perceptron | AUC= 0.97 (Extreme gradient boosting) |
| Kanazawa et al. 2018 [ | Distinction of solitary fibrous tumor/hemangiopericytoma from angiomatous meningioma | Texture analysis | • Positive predictive value=0.63 • Specificity=0.63 |
| Ke et al. 2019 [ | Differentiation between benign and non-benign meningiomas | • Support vector machine | • AUC= 0.91 • Accuracy= 0.89 • Sensibility=0.93 • Specificity=0.87 |
| Laukamp et al. 2018 [ | Automatic detection and segmentation of meningioma | Deep learning | • Detection accuracy=0.98 • Mean Dice coefficient for total tumor volume =0.81 ± 0.10 |
| Laukamp et al. 2019 [ | Prediction of meningioma grade | Multivariate logistic regression model | AUC=0.91 |
| Li et al. 2019 [ | Automatic differentiation of malignant hemangiopericytoma from angiomatous meningioma | Texture analysis | AUC=0.90 |
| Lu et al. 2018 [ | Prediction of meningioma grade using ADC maps | • Classic decision tree • Conditional inference • Decision forest | Accuracy= 0.62 |
| Morin et al. 2019 [ | Prediction of meningioma grade, local failure and overall survival | Random forest | • Grade= Accuracy 0.65; AUC 0.71 • Local Failure= Accuracy 0.61, AUC=0.68 • Overall Survival= accuracy 0.67, AUC= 0.75 |
| Niu et al. 2019 [ | Differentiation of meningioma subtypes | Fisher discriminant analysis | Accuracy= 0.99-0.1 |
| Park et al. 2018 [ | Prediction of grade and histological subtype | • Support vector machine • Random forest | AUC= 0.86 |
| Speckter et al. 2018 [ | Prediction of response after radiosurgery | Texture analysis | Correlation coefficient=−0.64 |
| Tian et al. 2020 [ | Contrastive analysis between craniopharyngioma and meningioma | Binary logistic regression | AUC>0.70 |
| Wei et al. 2020 [ | Differentiation of hemangiopericytoma from meningioma | Logistic regression model | AUC= 0.92–0.99 |
| Yan et al. 2017 [ | Prediction of meningioma grade | • Logistic regression • Naïve Bayes • Support vector machine | • AUC= 0.73–0.88 • Sensitivity= 0.48–0.91 • Specificity= 0.70–0.96 |
| Zhang et al. 2019 [ | Prediction of recurrence in skull base meningiomas | Random forest | Accuracy= 0.90 |
| Zhang et al. 2020 [ | Discrimination of lesions located in the anterior skull base | • Linear discriminant analysis • Support vector machine • Random forest • Adaboos • K-nearest neighbor • GaussianNB • Logistic regression • gradient • boosting decision tree • Decision tree | AUC>0.80 |
| Zhu et al. 2019 [ | Automatic prediction of meningioma grade | Convolutional neural network | AUC= 0.83 |
| Zhu et al. 2019 [ | Automatic prediction of meningioma grade | Deep learning | • AUC= 0.81 • Sensitivity= 0.8 • Specificity=0.9 |
AUC area under the receiver operating characteristic curve
Fig. 2Histogram (bars, bin number = 10) and kernel density estimation (line) plot of RQS percentage score distribution
Fig. 3RQS percentage score line plot in relation to publication year. Bars represent 95% confidence intervals, calculated with bootstrapping (1000 iterations)
Radiomics quality scores for all included articles
| First author | Year | Item 1 | Item 2 | Item 3 | Item 4 | Item 5 | Item 6 | Item 7 | Item 8 | Item 9 | Item 10 | Item 11 | Item 12 | Item 13 | Item 14 | Item 15 | Item 16 | RQS (total) | RQS (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Alkubeyyer | 2020 | 0 | 0 | 0 | 0 | −3 | 0 | 0 | 0 | 2 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 3 | 8 |
| Arokia Jesu Prabhu | 2018 | 0 | 0 | 0 | 0 | −3 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| Chen | 2019 | 1 | 0 | 0 | 0 | 3 | 0 | 1 | 0 | 1 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 10 | 28 |
| Chu | 2020 | 1 | 0 | 0 | 0 | 3 | 0 | 1 | 0 | 1 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 10 | 28 |
| Florez | 2018 | 1 | 1 | 0 | 0 | 3 | 0 | 0 | 0 | 1 | 0 | 0 | −5 | 0 | 0 | 0 | 0 | 1 | 3 |
| Hamerla | 2019 | 1 | 0 | 0 | 0 | 3 | 0 | 1 | 0 | 2 | 0 | 0 | 5 | 0 | 2 | 0 | 0 | 14 | 39 |
| Kanazawa | 2018 | 1 | 0 | 0 | 0 | −3 | 0 | 1 | 1 | 1 | 0 | 0 | −5 | 0 | 2 | 0 | 0 | 0 | 0 |
| Ke | 2019 | 1 | 0 | 0 | 0 | 3 | 0 | 1 | 0 | 1 | 0 | 0 | 3 | 0 | 2 | 0 | 0 | 11 | 31 |
| Laukamp | 2018 | 1 | 0 | 0 | 0 | −3 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 2 | 2 | 0 | 0 | 6 | 17 |
| Laukamp | 2019 | 1 | 0 | 0 | 0 | 3 | 0 | 1 | 0 | 1 | 0 | 0 | −5 | 0 | 2 | 0 | 0 | 3 | 8 |
| Li | 2019 | 1 | 0 | 0 | 0 | 3 | 0 | 1 | 0 | 1 | 0 | 0 | 2 | 2 | 2 | 0 | 0 | 12 | 33 |
| Lu | 2018 | 1 | 0 | 0 | 0 | 3 | 1 | 1 | 0 | 1 | 0 | 0 | 2 | 2 | 2 | 0 | 0 | 13 | 36 |
| Morin | 2019 | 0 | 0 | 0 | 0 | 3 | 1 | 1 | 0 | 1 | 0 | 0 | 3 | 2 | 2 | 0 | 0 | 13 | 36 |
| Niu | 2019 | 1 | 0 | 0 | 0 | 3 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 9 | 25 |
| Park | 2018 | 1 | 0 | 0 | 0 | 3 | 0 | 1 | 0 | 2 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 11 | 31 |
| Speckter | 2018 | 0 | 0 | 0 | 0 | 3 | 0 | 1 | 0 | 0 | 0 | 0 | −5 | 0 | 2 | 0 | 0 | 1 | 3 |
| Tian | 2020 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 2 | 0 | 0 | −5 | 0 | 2 | 0 | 0 | 2 | 6 |
| Wei | 2020 | 1 | 1 | 0 | 1 | 3 | 0 | 0 | 0 | 2 | 0 | 0 | 2 | 0 | 0 | 0 | 1 | 11 | 31 |
| Yan | 2017 | 1 | 0 | 0 | 0 | 3 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 9 | 25 |
| Zhang | 2019 | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | −5 | 0 | 2 | 0 | 0 | 1 | 3 |
| Zhang | 2020 | 1 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 8 | 22 |
| Zhu H | 2019 | 0 | 0 | 0 | 0 | −3 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 2 | 6 |
| Zhu Y | 2019 | 1 | 0 | 0 | 0 | 3 | 0 | 1 | 0 | 1 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 10 | 28 |
RQS radiomics quality score
Fig. 4Methodological quality of the studies included in the meta-analysis according to the QUADAS 2 tool for risk of bias and applicability concerns. Green, yellow, and red circles represent low, unclear, and high risk of bias, respectively
Characteristics of the studies included in the meta-analysis
| Paper | AUC | Low grade | High grade | Data source | Sequences | Model | Validation |
|---|---|---|---|---|---|---|---|
| Chen et al. | 0.93 | 12 | 18 | Single institution | CE T1 | LDA | CV |
| Chu et al. | 0.95 | 24 | 4 | Single institution | CE T1 | Logistic regression | Test set |
| Hamerla et al. | 0.97 | 102 | 45 | Multicenter | CE T1+others | XGBoost | CV |
| Ke et al. | 0.83 | 60 | 19 | Multicenter | CE T1+others | SVM | CV + test set |
| Laukamp et al. | 0.91 | 46 | 25 | Multicenter | CE T1+others | Logistic regression | CV |
| Morin et al. | 0.78 | 67 | 18 | Multicenter | CE T1 | RF | Test set |
| Yan et al. | 0.87 | 110 | 21 | Single institution | CE T1 | SVM | CV |
| Zhu et al. | 0.82 | 69 | 13 | Single institution | CE T1 | LDA | CV + test set |
AUC area under the receiver operating characteristic curve, CE T1 contrast-enhanced T1-weighted sequence, LDA linear discriminant analysis, SVM support vector machine, RF random forest, CV cross validation
Fig. 5Funnel plot asymmetry test for publication bias in the literature evaluation for high-grade meningioma characterization
Fig. 6Forest plot of single studies for the pooled area under the curve (AUC) and 95% CI of high-grade meningioma characterization