Literature DB >> 33649303

Structure of mammalian Mediator complex reveals Tail module architecture and interaction with a conserved core.

Haiyan Zhao1, Natalie Young1, Jens Kalchschmidt2, Jenna Lieberman2, Laila El Khattabi3, Rafael Casellas2,4, Francisco J Asturias5.   

Abstract

The Mediator complex plays an essential and multi-faceted role in regulation of RNA polymerase II transcription in all eukaryotes. Structural analysis of yeast Mediator has provided an understanding of the conserved core of the complex and its interaction with RNA polymerase II but failed to reveal the structure of the Tail module that contains most subunits targeted by activators and repressors. Here we present a molecular model of mammalian (Mus musculus) Mediator, derived from a 4.0 Å resolution cryo-EM map of the complex. The mammalian Mediator structure reveals that the previously unresolved Tail module, which includes a number of metazoan specific subunits, interacts extensively with core Mediator and has the potential to influence its conformation and interactions.

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Year:  2021        PMID: 33649303      PMCID: PMC7921410          DOI: 10.1038/s41467-021-21601-w

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  43 in total

1.  Protein structure prediction on the Web: a case study using the Phyre server.

Authors:  Lawrence A Kelley; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

2.  Core Mediator structure at 3.4 Å extends model of transcription initiation complex.

Authors:  Kayo Nozawa; Thomas R Schneider; Patrick Cramer
Journal:  Nature       Date:  2017-05-03       Impact factor: 49.962

3.  cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.

Authors:  Ali Punjani; John L Rubinstein; David J Fleet; Marcus A Brubaker
Journal:  Nat Methods       Date:  2017-02-06       Impact factor: 28.547

4.  Mediator structure and rearrangements required for holoenzyme formation.

Authors:  Kuang-Lei Tsai; Xiaodi Yu; Sneha Gopalan; Ti-Chun Chao; Ying Zhang; Laurence Florens; Michael P Washburn; Kenji Murakami; Ronald C Conaway; Joan W Conaway; Francisco J Asturias
Journal:  Nature       Date:  2017-03-01       Impact factor: 49.962

5.  Evidence for Multiple Mediator Complexes in Yeast Independently Recruited by Activated Heat Shock Factor.

Authors:  Jayamani Anandhakumar; Yara W Moustafa; Surabhi Chowdhary; Amoldeep S Kainth; David S Gross
Journal:  Mol Cell Biol       Date:  2016-06-29       Impact factor: 4.272

6.  DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy.

Authors:  N R Voss; C K Yoshioka; M Radermacher; C S Potter; B Carragher
Journal:  J Struct Biol       Date:  2009-05       Impact factor: 2.867

Review 7.  Molecular and in vivo Functions of the CDK8 and CDK19 Kinase Modules.

Authors:  Marius Volker Dannappel; Dhanya Sooraj; Jia Jian Loh; Ron Firestein
Journal:  Front Cell Dev Biol       Date:  2019-01-14

8.  The Mediator complex subunit MED25 is targeted by the N-terminal transactivation domain of the PEA3 group members.

Authors:  Alexis Verger; Jean-Luc Baert; Kathye Verreman; Frédérique Dewitte; Elisabeth Ferreira; Zoé Lens; Yvan de Launoit; Vincent Villeret; Didier Monté
Journal:  Nucleic Acids Res       Date:  2013-03-26       Impact factor: 16.971

9.  Mediator independently orchestrates multiple steps of preinitiation complex assembly in vivo.

Authors:  Fanny Eyboulet; Sandra Wydau-Dematteis; Thomas Eychenne; Olivier Alibert; Helen Neil; Claire Boschiero; Marie-Claire Nevers; Hervé Volland; David Cornu; Virginie Redeker; Michel Werner; Julie Soutourina
Journal:  Nucleic Acids Res       Date:  2015-08-03       Impact factor: 16.971

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  12 in total

1.  Structure of the human Mediator-RNA polymerase II pre-initiation complex.

Authors:  Srinivasan Rengachari; Sandra Schilbach; Shintaro Aibara; Christian Dienemann; Patrick Cramer
Journal:  Nature       Date:  2021-04-26       Impact factor: 49.962

Review 2.  The Mediator kinase module: an interface between cell signaling and transcription.

Authors:  Olivia Luyties; Dylan J Taatjes
Journal:  Trends Biochem Sci       Date:  2022-02-19       Impact factor: 13.807

Review 3.  Prostate Cancer Epigenetic Plasticity and Enhancer Heterogeneity: Molecular Causes, Consequences and Clinical Implications.

Authors:  Jeroen Kneppers; Andries M Bergman; Wilbert Zwart
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 3.650

4.  Accelerated 2D Classification With ISAC Using GPUs.

Authors:  Fabian Schöenfeld; Markus Stabrin; Tanvir R Shaikh; Thorsten Wagner; Stefan Raunser
Journal:  Front Mol Biosci       Date:  2022-07-06

Review 5.  Assembly of RNA polymerase II transcription initiation complexes.

Authors:  Lucas Farnung; Seychelle M Vos
Journal:  Curr Opin Struct Biol       Date:  2022-02-17       Impact factor: 7.786

6.  Suppression of p53 response by targeting p53-Mediator binding with a stapled peptide.

Authors:  Benjamin L Allen; Kim Quach; Taylor Jones; Cecilia B Levandowski; Christopher C Ebmeier; Jonathan D Rubin; Timothy Read; Robin D Dowell; Alanna Schepartz; Dylan J Taatjes
Journal:  Cell Rep       Date:  2022-04-05       Impact factor: 9.995

7.  Structure of the human Mediator-bound transcription preinitiation complex.

Authors:  R Abdella; A Talyzina; S Chen; C J Inouye; R Tjian; Y He
Journal:  Science       Date:  2021-03-11       Impact factor: 47.728

8.  The SAGA complex regulates early steps in transcription via its deubiquitylase module subunit USP22.

Authors:  Timothy J Stanek; Victoria J Gennaro; Mason A Tracewell; Daniela Di Marcantonio; Kristen L Pauley; Sabrina Butt; Christopher McNair; Feng Wang; Andrew V Kossenkov; Karen E Knudsen; Tauseef Butt; Stephen M Sykes; Steven B McMahon
Journal:  EMBO J       Date:  2021-06-22       Impact factor: 14.012

9.  The Cdk8 kinase module regulates interaction of the Mediator complex with RNA polymerase II.

Authors:  Sara Osman; Eusra Mohammad; Michael Lidschreiber; Alexandra Stuetzer; Fanni Laura Bazsó; Kerstin C Maier; Henning Urlaub; Patrick Cramer
Journal:  J Biol Chem       Date:  2021-04-29       Impact factor: 5.157

10.  The Pol II preinitiation complex (PIC) influences Mediator binding but not promoter-enhancer looping.

Authors:  Fei Sun; Terrence Sun; Michael Kronenberg; Xianglong Tan; Chengyang Huang; Michael F Carey
Journal:  Genes Dev       Date:  2021-07-22       Impact factor: 11.361

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