Chinatsu Otake1, Takuya Namba1, Hidetsugu Tabata2, Kosho Makino1, Kiriko Hirano3, Tetsuta Oshitari2, Hideaki Natsugari4, Takenori Kusumi5, Hideyo Takahashi1. 1. Faculty of Pharmaceutical Sciences, Tokyo University of Science, 2641Yamazaki, Noda-shi, Chiba 278-8510, Japan. 2. Faculty of Pharma Sciences, Teikyo University, 2-11-1 Kaga, Itabashi-ku, Tokyo 173-8605, Japan. 3. Bruker Japan K.K., 3-9 Moriya, Kanagawa-ku, Yokohama, Kanagawa 221-0022, Japan. 4. Graduate School of Pharmaceutical Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan. 5. Department of Chemistry, Tokyo Institute of Technology, Meguro-ku, Tokyo 152-8551, Japan.
Abstract
The conformational properties of 2'-fluoro-substituted acetophenone derivatives were elucidated based on Hα-F and Cα-F through-space spin-spin couplings (TS-couplings), which occur between two atoms constrained at a distance smaller than the sum of their van der Waals radii. This study revealed that 2'-fluoro-substituted acetophenone derivatives in solutions form exclusively s-trans conformers by analyzing their NMR spectra focused on the TS-couplings. The magnitudes of the coupling constants 5J (Hα, F) and 4J (Cα, F) correlate linearly with the value of the dielectric constant of the solvents. Furthermore, s-trans conformations of the two derivatives were confirmed by X-ray crystallographic analysis. These conformational preferences were consistent with the DFT calculations. The s-cis conformer, in which fluorine and oxygen atoms lie in a syn-periplanar mode, may be subject to strong repulsion between the two polar atoms and become unstable. The s-trans preference of the 2'-fluoro-substituted acetophenone derivatives may be utilized in drug design.
The conformational properties of 2'-fluoro-substituted acetophenone derivatives were elucidated based on Hα-F and Cα-F through-space spin-spin couplings (TS-couplings), which occur between two atoms constrained at a distance smaller than the sum of their van der Waals radii. This study revealed that 2'-fluoro-substituted acetophenone derivatives in solutions form exclusively s-trans conformers by analyzing their NMR spectra focused on the TS-couplings. The magnitudes of the coupling constants 5J (Hα, F) and 4J (Cα, F) correlate linearly with the value of the dielectric constant of the solvents. Furthermore, s-trans conformations of the two derivatives were confirmed by X-ray crystallographic analysis. These conformational preferences were consistent with the DFT calculations. The s-cis conformer, in which fluorine and oxygen atoms lie in a syn-periplanar mode, may be subject to strong repulsion between the two polar atoms and become unstable. The s-trans preference of the 2'-fluoro-substituted acetophenone derivatives may be utilized in drug design.
Fluorine, which exhibits
a range of remarkable chemical, physical,
and biological properties, has been recognized as a valuable element
in various branches of science, including medicinal chemistry. More
than 20% of known drugs contain fluorine atoms, and the immense stereoelectronic
effects of fluorine on bioactive organic molecules have been extensively
examined.[1] One important tool to comprehend
the structural features of fluorine compounds is NMR spectroscopy,
in which fluorine (19F; I = 1/2) gives
valuable hints regarding the structure and stereochemistry of compounds.
One of the most peculiar of the NMR behaviors of fluorine is “through-space
spin–spin coupling (TS-coupling).”[2] TS-couplings are observed between two atoms when either
has lone-pair electrons and both are constrained at a distance smaller
than the sum of their van der Waals radii. Fluorine has lone-pair
electrons and has been the object of numerous studies in terms of
determining conformations with long-range hydrogen–fluorine
(1H–19F) and carbon–fluorine (13C–19F) TS-couplings.[3] For example, the 1H–19F TS-coupling
was detected in alkylfluorobenzenes where hydrogen and fluorine were
separated by five bonds.[4]13C–19F TS-coupling over five bonds was also observed
in 1,4,8-trimethyl-5-fluorophenanthrene.[5] Whenever two nuclei, such as 19F/19F, 19F/1H, and 19F/13C, are in
van der Waals contact through space, regardless of how many bonds
separate them, they can exchange spin information.[6]In the course of our studies of bioactive compounds,
we synthesized
acetophenone derivatives (1a and 1b) (Figure ). In the 1H NMR and 13C NMR spectra of 1a and 1b, we recognized significant magnitudes of TS-couplings between
Hα–F and Cα–F. These
TS-couplings may mean that two atoms (Hα and F/Cα and F) are constrained at a distance smaller than the
sum of their van der Waals radii. Therefore, we deduced that compounds 1a and 1b prefer s-trans conformations to cis conformations (Figure ), suggesting that the fluorine
atoms control the conformation of the compound. Various 2′-substituted
acetophenones were synthesized, and conformational studies were performed.[7] Among the studies, Schaefer examined TS-coupling
of 2-fluoro and 2,6-fluoroacetophenones based on calculations,[3d] but that work has received relatively little
attention, although the results are extremely significant.
Figure 1
Through-space
spin–spin couplings observed in 1a and 1b.
Through-space
spin–spin couplings observed in 1a and 1b.In this work, we report the TS-couplings
observed in the NMR spectra
of several 2′-fluoro-substitutedacetophenone derivatives.
Additional DFT calculations and X-ray structural analyses supported
the preference of the s-trans conformers
of these derivatives. The conformational properties of these fluorinated
compounds can give clues to the design of new drugs containing fluorine
atoms.
Results and Discussion
Propiophenone derivatives 1a and 1b were
prepared from 2-bromo-2′-fluoroacetophenone (1e)[8] by treatment with malononitrile and
ethyl cyanoacetate, respectively. 2′-Fluorobutyrophenone (1c) was prepared by reacting 2′-fluorobenzonitrile
(2) with propylmagnesium chloride (Scheme ). Compounds 3,[9]4,[10]5,[11] and 1d–p were commercially available.
Scheme 1
Synthesis of Propiophenone Derivatives 1a, 1b, and 1c
Figure a,b shows
the 1H NMR signals of Hα of 1a and 1b, respectively. A splitting pattern of the chemically
equivalent methylene protons Hα of 1a (Figure a, left)
was observed as a doublet of doublets (dd), which was assumed to be
the result of the coupling between Hα and Hβ(J = 6.9 Hz) and the additional coupling between
Hα and F (TS-coupling: J = 3.2 Hz).
Similarly, the AB part of the ABX signal of the diastereotopic methylene
protons (Hα and Hα) (Jαα′ = 18.8 Hz, Jαβ = 6.8 Hz, Jα′β = 6.4 Hz) of 1b [Figure a, right] is further
subjected to coupling with F (TS-coupling: JαF = 3.3 Hz, Jα′F = 3.3 Hz).
Figure 2
400 MHz NMR spectra in CDCl3: (a) Hα of 1a (left) and Hα and Hα of 1b (right); (b) spectra with 19F decoupling of Hα of 1a (left)
and Hα and Hα of 1b (right).
400 MHz NMR spectra in CDCl3: (a) Hα of 1a (left) and Hα and Hα of 1b (right); (b) spectra with 19F decoupling of Hα of 1a (left)
and Hα and Hα of 1b (right).To confirm that the splitting of the Hα of 1a and 1b is actually caused by F atoms, 19F-decoupled 1H NMR experiments were carried out.
As shown in Figure b, irradiation of 19F resulted in simplification of their
signal patterns, and these experiments determined the Hα–F coupling constants of 1a and 1b to be 3.2 and 3.3 Hz. These protons are 5 bonds apart from the fluorine.
In general, the through-bond coupling constant (5JFH) is less than 1 Hz, and the observed values
of over 3.2 Hz infer that 1H–19F TS-couplings
are working in 1a and 1b. In the proton-decoupled 13C NMR spectrum of 1a and 1b, the
signals of the Cαs were observed as doublets (4JCF = 10.5 and 10.1 Hz), which
were assumed to be caused by the TS-coupling between Cα and F (see the Supporting Information).To confirm that such a TS-coupling is characteristic of
2′-fluoroacetophenones,
the 1H NMR spectra of 3′-fluoroacetophenone (3), 2′-fluorophenylacetone (4), and 2′-fluorophenylethanol
(5) (Figure ) were studied. The methyl protons of 3 and 4 appear as sharp singlets without coupling with 19F because the methyl groups are distant from the fluorine. The β-methylene
protons of 5, although they are 5 bonds apart from the ortho-fluorine, show a mere triplet, possibly because of
the flexible CH2–CH2 bond, which can
position the β-CH2 spatially far from the fluorine.
It should be noted that the α-CH2 of 4 and 5, which are 4 bonds apart from F, do not show
coupling with 19F; that is, through bond coupling, 4JFH is negligible in these compounds.
These properties are in contrast with those shown by 1a–c, supporting the deduction that the o-fluoro-substituted benzoyl structure provides the s-trans conformation as a key factor for
TS-couplings.
Figure 3
3′-Fluoroacetophenone (3), 2′-fluorophenylacetone
(4), and 2-(2′-fluorophenyl)ethanol (5).
3′-Fluoroacetophenone (3), 2′-fluorophenylacetone
(4), and 2-(2′-fluorophenyl)ethanol (5).In order to confirm the generality, 1H/13C NMR spectra of other acetophenone derivatives
(1d–p) were measured. As expected,
relatively large Hα–F and Cα–F TS-couplings were observed
(5JHF, 3.20–5.03 Hz; 4JCF, 6.70–11.56 Hz) (Table ), which is in accordance
with the assumption that the acetophenone derivatives 1a–p prefer s-trans forms exclusively in solution.
Table 1
Through-Space Coupling
Constants of
Compounds 1a–p
compound
R1
R2
J (Hα, F)
(Hz)
J (Cα, F)
(Hz)
1a
–CH(CN)2
–H
3.21
10.54
1b
–CH(CN, CO2Et)
–H
3.28
10.11
1c
–CH2CH3
–H
3.20
6.70
1d(12)
–H
–H
5.03
7.71
1e(8)
–Br
–H
3.20
9.63
1f(13)
–CH3
–H
3.20
7.71
1g(14)
–CO2CH2CH3
–H
3.66
8.67
1h(15)
–H
4′-Br
5.03
6.74
1i(16)
–H
5′-Br
5.03
7.71
1j(17)
–H
4′-OH
5.03
7.71
1k(18)
–H
4′-F
5.03
7.71
1l(19)
–H
4′,5′-F
5.03
7.71
1m(20)
–H
5′-NO2
5.03
6.74
1n(21)
–H
4′-OCH3
5.03
7.71
1o(22)
–CH3
4′-F
3.20
7.71
1p(23)
–Cl
4′-F
3.20
11.56
It is worth mentioning that TS-coupling in compounds 1a–p is sensitive to the nature of the
substituents
at Cα. While the acetophenones1d and 1h–n with various substituents on their
benzene rings have the same coupling constants (5JHF = 5.03 Hz), those of 1a–g (except for 1d) and 1o–p, in which Cα is variously substituted,
are smaller in magnitude (5JHF: 3.20–3.66 Hz). These differences may be interpreted by the
preceding report that the magnitude of TS-coupling depends not only
on the distance between the nuclei but also on the orientation of
the orbitals involved in the transmission pathway.[2b] The substituents at Cα can affect the
orbitals of Hα and Cα on determining
the orientation and the transmission of the nuclei spin information
through space.Next, the solvent effect on the magnitude of
TS-coupling was examined.
In the 1H and 13C NMR spectra of 2′-fluoroacetophenone
(1d), Hα–F and Cα–F TS-couplings were determined for the solutions in various
solvents (Table ).
It is obvious from the large values of 5JHF and 4JCF that
the s-trans conformer is fairly
commonly preferred in any of these solutions. Furthermore, variation
from low (benzene-d6, ε = 2.28)
to high (DMSO-d6, ε = 47.2) dielectric
constant solvents produced changes in the magnitudes of the coupling
constants 5J (Hα, F)
and 4J (Cα, F), which
correlate linearly to the dielectric constant of the solvents (Figure ).
Table 2
Solvent Effect on the Coupling Constant
(Hz) of 1d
solvent
εa
5J (Hα, F) (Hz)
4J (Cα, F) (Hz)
DMSO-d6
47.2
4.12
5.78
CH3OH-d4
33.0
4.57
6.74
acetone-d6
21.0
4.57
6.74
CH2Cl2-d2
8.93
5.03
7.71
CHCl3-d1
4.81
5.03
7.71
benzene-d6
2.28
5.03
7.71
ε = Dielectric
constant.[24]
Figure 4
Plots of the coupling constants 5J (H,
F) and 4J (C, F) observed in 1d and the dielectric constant of the solvent.
ε = Dielectric
constant.[24]Plots of the coupling constants 5J (H,
F) and 4J (C, F) observed in 1d and the dielectric constant of the solvent.As mentioned above, the preference for the s-trans conformer of acetophenone derivatives 1a–p was clarified. In order to obtain information
on the stability of the s-trans conformation
compared with the s-cis conformation, 1a–p were analyzed by DFT calculations. First,
the conformational ensembles of 1a–p were generated from 2D chemical structures as the initial structures
for the DFT calculations. These conformations generated were optimized
with the RDKit using the universal force field (UFF) and clustered
using a tolerance of 0.2 Å root-mean-square derivation. For each
conformer, Hartree–Fock (HF) calculations were carried out
to obtain optimized geometries and energies at the RHF/6-31G(d) and
B3LYP/6-31G(d) levels. Due to insufficient formation of conformations
in compounds 1d and 1h–n, we calculated the energy surfaces defined by a dihedral angle (∠O=C–C1′-C2′)
to obtain stable conformers at the B3LYP/STO-3G level.For the
most stable structure in each cis/trans isomer, the geometries were further optimized at a
more accurate level, i.e., RB3LYP/6-31G(d) on the SCRF/IEFPCM model
in CHCl3 and RmPW1PW91/6-311G(d,p) on the SCRF/IEFPCM model
in CHCl3. Zero-point energy (ZPE) correction was made on
the basis of the frequency calculation with RmPW1PW91/6-311G(d,p)
on the SCRF/IEFPCM model in CHCl3. As expected, the DFT
calculation for 1a–p confirmed that trans conformers are more stable than cis conformers. Further, using the energy differences (ΔG) between cis/trans conformers
calculated by DFT, the ratios (cis/trans) based on the Boltzmann distribution were also calculated (Table ). It was revealed
that compounds 1a–p exist predominantly
as trans conformers.
Table 3
Difference
in Energy and Ratio (cis/trans)
of Compounds 1a–p Calculated at mPW1PW91/6-311G(d,p),
IEFPCM:
CHCl3.
compound
R1
R2
ΔGtrans/cis (kcal/mol)
trans/cis
1a
–CH(CN)2
–H
2.57
99:1
1b
–CH(CN, CO2Et)
–H
2.91
99:1
1c
–CH2CH3
–H
2.28
98:2
1d
–H
–H
3.56
>99:1
1e
–Br
–H
2.09
97:3
1f
–CH3
–H
4.13
>99:1
1g
–CO2CH2CH3
–H
2.67
99:1
1h
–H
4′-Br
3.51
>99:1
1i
–H
5′-Br
3.60
>99:1
1j
–H
4′-OH
2.40
98:2
1k
–H
4′-F
1.99
97:3
1l
–H
4′,5′-F
2.48
99:1
1m
–H
5′-NO2
3.02
99:1
1n
–H
4′-OCH3
1.75
95:5
1o
–CH3
4′-F
2.95
99:1
1p
–Cl
4′-F
3.23
>99:1
When
these s-trans conformations
of compounds 1a–p were optimized
at the mPW1PW91/6-311G(d,p) level, the Hα–F
and Cα–F internuclear distances of 1a–p were estimated (Table ). In all cases, Hα–F
internuclear distances are smaller than the sum of van der Waals radii
of fluorine and hydrogen (∼2.67 × 10–10 m), and Cα–F distances are also smaller
than that of fluorine and carbon (∼3.23 × 10–10 m).[25]
Table 4
Hα–Fand Cα–F Internuclear Distances
of the s-trans Conformations of Compounds 1a–p Calculated at mPW1PW91/6-311G(d,p), IEFPCM:
CHCl3
internuclear
distance (10–10 m)
compound
R1
R2
Hα–F
Cα–F
1a
–CH(CN)2
–H
2.40
2.71
1b
–CH(CN,
CO2Et)
–H
2.43
2.73
1c
–CH2CH3
–H
2.43
2.76
1d
–H
–H
2.48
2.74
1e
–Br
–H
2.25
2.81
1f
–CH3
–H
2.43
2.76
1g
–CO2CH2CH3
–H
2.38
2.75
1h
–H
4′-Br
2.48
2.75
1i
–H
5′-Br
2.48
2.75
1j
–H
4′-OH
2.48
2.75
1k
–H
4′-F
2.48
2.75
1l
–H
4′,5′-F
2.49
2.76
1m
–H
5′-NO2
2.50
2.76
1n
–H
4′-OCH3
2.49
2.75
1o
–CH3
4′-F
2.43
2.77
1p
–Cl
4′-F
2.30
2.81
Since acetophenone derivatives 1m and 1n were obtained as single crystals, the solid states were
examined
by X-ray crystallography. In each crystal, only the s-trans conformer was present (Figures and 6, left). The Hα–F and Cα–F internuclear distances
of compounds 1m and 1n were measured (1m: Hα–F = 2.39 × 10–10 m, Cα–F = 2.77 × 10–10 m; 1n: Hα–F = 2.48 × 10–10 m, Cα–F = 2.74 × 10–10 m), which were smaller than the sum of van der Waals
radii of fluorine and hydrogen and that of fluorine and carbon. In Figures and 6 (right), s-trans conformers of 1m and 1n as calculated by the DFT method reflecting the
contribution of CHCl3 are shown for comparison. The structures
and the Hα–F and Cα–F
internuclear distances obtained by calculation are very similar to
those of the solid state. Additionally, it was found that the benzene
ring and carbonyl group are almost coplanar. The dihedral angle C2′–C1′-C=O
of the solid state of compound 1m is 169.9° and
that of 1n is 179.8°.
Figure 5
X-ray crystal structure
(left) and the calculated one optimized
by calculation at mPW1PW91/6-311G(d,p), IEFPCM: CHCl3 (right)
of 1m.
Figure 6
X-ray crystal structure
(left) and the calculated one optimized
by calculation at mPW1PW91/6-311G(d,p), IEFPCM: CHCl3 (right)
of 1n.
X-ray crystal structure
(left) and the calculated one optimized
by calculation at mPW1PW91/6-311G(d,p), IEFPCM: CHCl3 (right)
of 1m.X-ray crystal structure
(left) and the calculated one optimized
by calculation at mPW1PW91/6-311G(d,p), IEFPCM: CHCl3 (right)
of 1n.All of these findings
make it clear that 2′-fluoroacetophenone
derivatives form s-trans conformations
exclusively, and as a result, Hα–F and Cα–F TS-couplings are observed in their NMR spectra.
A high polarization of Cδ+–Fδ− and the presence of three lone pairs on fluorine might suggest that
the fluorine of the C–F bond could act as a hydrogen bond acceptor.
However, it is known that fluorine in organic molecules forms relatively
weak hydrogen bonds. The Hα–F internuclear
distances of compounds 1m and 1n in the
crystal state were 2.39 × 10–10 m and 2.48
× 10–10 m, respectively (Figures and 6). Such relatively
long distances, meaning a weaker interaction compared with a typical
hydrogen bond (e.g., ROH···O=C ∼ 1.9
× 10–10 m),[1b] give
less conclusive proof of the conformational preference. The understanding
of this phenomenon requires a discussion of the ionic nature of the
C–F bond, which causes a large dipole moment (μ). The
dipole of the C–F bond plays a significant part in determining
the conformational behavior of fluorinated organic molecules. For
example, α-fluorocarbonyl compounds prefer a conformation where
the C–F bond lies anti-periplanar to the carbonyl
group, in which carbonyl and C–F dipoles oppose each other
to minimize the dipole of the entire molecule.[26] Based on this point of view, the s-cis conformation where the C–F bond lies syn-periplanar to the carbonyl group should maximize the dipole of the
entire molecule, which makes the s-cis conformation
unstable. On the other hand, s-trans conformers, in which the benzene ring and carbonyl group are almost
coplanar, minimize the repulsive dipoles of the C–F bond and
carbonyl group. As a result, acetophenone derivatives 1a–p might prefer s-trans conformers to cis conformers (Figure ).
Figure 7
Conformational property
of 2′-fluoroacetophenone derivatives.
Conformational property
of 2′-fluoroacetophenone derivatives.
Conclusion
Hα–F and Cα–F TS-couplings
were observed in the NMR spectra of 2′-fluoro-substitutedacetophenone
derivatives 1a–p, and the over whelming s-trans conformational preference was elucidated.
The magnitudes of the coupling constants 5J (Hα, F) and 4J (Cα, F) correlate with the nature of the substituents at
Cα and the value of the dielectric constant of solvents.
Additionally, X-ray structural analysis suggested that the benzene
ring and carbonyl group are almost coplanar in the s-trans conformation, which makes the Hα–F and Cα–F internuclear distances
smaller than the sum of their van der Waals radii. Such conformations
were reproduced with DFT calculations. Considering the ionic nature
of the C–F bond, which causes a large dipole moment (μ),
it was assumed that the s-trans conformation,
in which the C–F dipole detaches from the carbonyl group repulsively,
minimizes the dipole of the entire molecule. The dipole of the C–F
bond must play a significant part in determining the conformational
behavior of 2′-fluoro-substitutedacetophenones. The 2′-fluoro-substitutedacetophenones with the preferable s-trans conformations are expected to be utilized as new basic scaffolds
for the design of bioactive compounds in medicinal chemistry in the
future.
Experimental Section
General Information
Materials were obtained from commercial
suppliers. Although all of the fluoro compounds in this work are known
and their NMR data have been presented, the more detailed NMR properties,
which we newly determined, were defined in order to demonstrate TS-coupling.
NMR spectra were recorded on a spectrometer at 400 or 600 MHz for 1H NMR and 100 or 150 MHz for 13C NMR. Chemical
shifts are given in parts per million (ppm) downfield from tetramethylsilane
as an internal standard, and coupling constants (J) are reported in hertz (Hz). Splitting patterns are abbreviated
as follows: singlet (s), doublet (d), triplet (t), quartet (q), multiplet
(m), and broad (br). IR spectra were recorded on an FT-IR spectrometer
equipped with ATR (Diamond). The high-resolution mass spectra (HRMS)
were recorded on a TOF-MS instrument with an ionization mode of ESI
and APCI. Melting points were recorded on a melting point apparatus
and are uncorrected. Analytical thin-layer chromatography was performed
on precoated, glass-backed silica gel plates. Column chromatography
was performed using silica gel (45–60 μm). Extracted
solutions were dried over anhydrous MgSO4 or Na2SO4. Solvents were evaporated under reduced pressure.
Since compounds 3, 4, 5, and 1d–p were commercially available, characterization
data of 1H NMR and 13C NMR were described.
Authors: Bobo Skillinghaug; Christian Sköld; Jonas Rydfjord; Fredrik Svensson; Malte Behrends; Jonas Sävmarker; Per J R Sjöberg; Mats Larhed Journal: J Org Chem Date: 2014-10-31 Impact factor: 4.354
Authors: Yu-Kai Lee; Daniel J Parks; Tianbao Lu; Tho V Thieu; Thomas Markotan; Wenxi Pan; David F McComsey; Karen L Milkiewicz; Carl S Crysler; Nisha Ninan; Marta C Abad; Edward C Giardino; Bruce E Maryanoff; Bruce P Damiano; Mark R Player Journal: J Med Chem Date: 2007-12-27 Impact factor: 7.446