Literature DB >> 33645534

Evaluation of the data-collection strategy for room-temperature micro-crystallography studied by serial synchrotron rotation crystallography combined with the humid air and glue-coating method.

Kazuya Hasegawa1, Seiki Baba1, Takashi Kawamura1, Masaki Yamamoto2, Takashi Kumasaka1.   

Abstract

Synchrotron serial crystallography (SSX) is an emerging data-collection method for micro-crystallography on synchrotron macromolecular (MX) crystallography beamlines. At SPring-8, the feasibility of the fixed-target approach was examined by collecting data using a 2D raster scan combined with goniometer rotation. Results at cryogenic temperatures demonstrated that rotation is effective for efficient data collection in SSX and the method was named serial synchrotron rotation crystallography (SS-ROX). To use this method for room-temperature (RT) data collection, a humid air and glue-coating (HAG) method was developed in which data were collected from polyvinyl alcohol-coated microcrystals fixed on a loop under humidity-controlled air. The performance and the RT data-collection strategy for micro-crystallography were evaluated using microcrystals of lysozyme. Although a change in unit-cell dimensions of up to 1% was observed during data collection, the impact on data quality was marginal. A comparison of data obtained at various absorbed doses revealed that absorbed doses of up to 210 kGy were tolerable in both global and local damage. Although this limits the number of photons deposited on each crystal, increasing the number of merged images improved the resolution. On the basis of these results, an equation was proposed that relates the achievable resolution to the total photon flux used to obtain a data set. open access.

Entities:  

Keywords:  humidity control; macromolecular crystallography; radiation damage; room-temperature data collection; serial synchrotron crystallography

Year:  2021        PMID: 33645534      PMCID: PMC7919407          DOI: 10.1107/S2059798321001686

Source DB:  PubMed          Journal:  Acta Crystallogr D Struct Biol        ISSN: 2059-7983            Impact factor:   7.652


  43 in total

1.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

Review 2.  Practical macromolecular cryocrystallography.

Authors:  J W Pflugrath
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-05-27       Impact factor: 1.056

3.  Humidity control and hydrophilic glue coating applied to mounted protein crystals improves X-ray diffraction experiments.

Authors:  Seiki Baba; Takeshi Hoshino; Len Ito; Takashi Kumasaka
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-08-17

4.  SPring-8 BL41XU, a high-flux macromolecular crystallography beamline.

Authors:  Kazuya Hasegawa; Nobutaka Shimizu; Hideo Okumura; Nobuhiro Mizuno; Seiki Baba; Kunio Hirata; Tomoyuki Takeuchi; Hiroshi Yamazaki; Yasunori Senba; Haruhiko Ohashi; Masaki Yamamoto; Takashi Kumasaka
Journal:  J Synchrotron Radiat       Date:  2013-10-02       Impact factor: 2.616

5.  Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation.

Authors:  Jose M Martin-Garcia; Chelsie E Conrad; Garrett Nelson; Natasha Stander; Nadia A Zatsepin; James Zook; Lan Zhu; James Geiger; Eugene Chun; David Kissick; Mark C Hilgart; Craig Ogata; Andrii Ishchenko; Nirupa Nagaratnam; Shatabdi Roy-Chowdhury; Jesse Coe; Ganesh Subramanian; Alexander Schaffer; Daniel James; Gihan Ketwala; Nagarajan Venugopalan; Shenglan Xu; Stephen Corcoran; Dale Ferguson; Uwe Weierstall; John C H Spence; Vadim Cherezov; Petra Fromme; Robert F Fischetti; Wei Liu
Journal:  IUCrJ       Date:  2017-05-24       Impact factor: 4.769

6.  A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.

Authors:  Atsuhiro Shimada; Minoru Kubo; Seiki Baba; Keitaro Yamashita; Kunio Hirata; Go Ueno; Takashi Nomura; Tetsunari Kimura; Kyoko Shinzawa-Itoh; Junpei Baba; Keita Hatano; Yuki Eto; Akari Miyamoto; Hironori Murakami; Takashi Kumasaka; Shigeki Owada; Kensuke Tono; Makina Yabashi; Yoshihiro Yamaguchi; Sachiko Yanagisawa; Miyuki Sakaguchi; Takashi Ogura; Ryo Komiya; Jiwang Yan; Eiki Yamashita; Masaki Yamamoto; Hideo Ago; Shinya Yoshikawa; Tomitake Tsukihara
Journal:  Sci Adv       Date:  2017-07-14       Impact factor: 14.136

7.  Low-dose fixed-target serial synchrotron crystallography.

Authors:  Robin L Owen; Danny Axford; Darren A Sherrell; Anling Kuo; Oliver P Ernst; Eike C Schulz; R J Dwayne Miller; Henrike M Mueller-Werkmeister
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-03-31       Impact factor: 7.652

8.  High-viscosity injector-based pink-beam serial crystallography of microcrystals at a synchrotron radiation source.

Authors:  Jose M Martin-Garcia; Lan Zhu; Derek Mendez; Ming-Yue Lee; Eugene Chun; Chufeng Li; Hao Hu; Ganesh Subramanian; David Kissick; Craig Ogata; Robert Henning; Andrii Ishchenko; Zachary Dobson; Shangji Zhang; Uwe Weierstall; John C H Spence; Petra Fromme; Nadia A Zatsepin; Robert F Fischetti; Vadim Cherezov; Wei Liu
Journal:  IUCrJ       Date:  2019-04-05       Impact factor: 4.769

9.  Serial crystallography on in vivo grown microcrystals using synchrotron radiation.

Authors:  Cornelius Gati; Gleb Bourenkov; Marco Klinge; Dirk Rehders; Francesco Stellato; Dominik Oberthür; Oleksandr Yefanov; Benjamin P Sommer; Stefan Mogk; Michael Duszenko; Christian Betzel; Thomas R Schneider; Henry N Chapman; Lars Redecke
Journal:  IUCrJ       Date:  2014-02-10       Impact factor: 4.769

Review 10.  Protein microcrystallography using synchrotron radiation.

Authors:  Masaki Yamamoto; Kunio Hirata; Keitaro Yamashita; Kazuya Hasegawa; Go Ueno; Hideo Ago; Takashi Kumasaka
Journal:  IUCrJ       Date:  2017-08-08       Impact factor: 4.769

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  1 in total

1.  In situ crystal data-collection and ligand-screening system at SPring-8.

Authors:  Hideo Okumura; Naoki Sakai; Hironori Murakami; Nobuhiro Mizuno; Yuki Nakamura; Go Ueno; Takuya Masunaga; Takashi Kawamura; Seiki Baba; Kazuya Hasegawa; Masaki Yamamoto; Takashi Kumasaka
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2022-05-27       Impact factor: 1.072

  1 in total

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