| Literature DB >> 33644198 |
Yan Yuan1, Shuang Yao2, Guang-Hua Luo2, Xiao-Ying Zhang3.
Abstract
BACKGROUND: During surgery for gastric cancer, peritoneal lavage using warm distilled water can cause temporary hemodynamic changes. AIM: To examine the associations between changes in heart rate and single nucleotide polymorphisms (SNPs).Entities:
Keywords: Blood pressure; Distilled water; Gastric cancer; Heart rate; Peritoneal lavage; Single-nucleotide polymorphism
Year: 2021 PMID: 33644198 PMCID: PMC7896693 DOI: 10.12998/wjcc.v9.i6.1318
Source DB: PubMed Journal: World J Clin Cases ISSN: 2307-8960 Impact factor: 1.337
Validation of the mutation sites in six patients with a sudden drop in heart rate during distilled water lavage
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| SNP | ||||||||||
| 1 | chr14 | 20757383 | 20757383 | A | G | UTR3 | TTC5 | 0/6 | CCAAAGAAGAGGAAGGACCTAAAG | CTGTCTCTTCCACTGCTCTCTATGTT |
| 2 | chr14 | 20818983 | 20818983 | C | T | intronic | PARP2-920 | 0/6 | TTTATGAGTTGGCATTCAGAAAGTC | GAAAGGTGAAAGGATTTAGGGAAC |
| 3 | chr14 | 20824859 | 20824859 | T | C | intronic | PARP2-156 | 0/6 | ATAAGAGGGAGTCAGAGGAAGGTGT | AGCACTGAGAACATTACTGTATCCCT |
| 4 | chr14 | 20837701 | 20837701 | G | C | exonic | TEP1-886 | 0/6 | GTGTCTTTAGATGTGGTGTTGGCT | TGGCAGAGTCCTCATTTTTGTGT |
| 5 | chr14 | 20841162 | 20841162 | C | T | intronic | TEP1-0948 | 0/6 | CCTCTAACGCCCAGTAAATACACAG | TCTCTTATCCCAGCAGTATCCCAG |
| 6 | chr14 | 20841313 | 20841313 | G | A | intronic | TEP1-0948 | 0/6 | ||
| 7 | chr14 | 20841707 | 20841707 | C | T | exonic | TEP1-449 | 0/6 | TATTCCGCATACCTTCCCCAC | CCCTGCTCCGTCCCTTCTT |
| 8 | chr16 | 1756178 | 1756178 | T | C | upstream | MAPK8IP3 | 0/6 | GGAAGCGACCACTGCCG | CATCTGGATCTCCATCATCGC |
| 9 | chr17 | 8161149 | 8161149 | C | T | exonic | PFAS | 0/6 | GAAAGCCTGTGTAACTCTGATTGC | ATTACTGGCTTCAATGGCAACC |
| 10 | chr17 | 73627539 | 73627539 | T | C | exonic | RECQL5 | 0/6 | GCAATGTCCCTGATGTCCTACC | CTGGAGCAAGACCTGCATCG |
| 11 | chr21 | 35470291 | 35470291 | - | T | UTR3 | SLC5A3 | 0/6 | CGAATGTGCTTGTGTGATACTTGTT | GGCAGACTTGTTGGTCATTTCAG |
| 12 | chr9 | 98691137 | 98691137 | T | C | exonic | ERCC6L2 | 1/6 | CTTGATTACCGACGACTTGATGG | ATGTTGATAAAGGAAATGAGAGAAAAGC |
| Indel | ||||||||||
| 13 | chr17 | 8052526 | 8052532 | AAAAACA | - | intronic | PER1 | 0/6 | TGAAACCCCGTCTCTACTGAAAATAC | TCCCTTAGTGGATTCTTCGCAG |
| 14 | chr12 | 133417982 | 133417982 | - | AA | UTR3 | CHFR | 1/6 | GAAAGGCTTCGTCTCTGCTGC | TGGAGGTGAAGAGAGCGTGTTT |
Chr: Chromosome number; Ref: Reference sequence; Alt: Alteration sequence; FOC: Frequency of mutation in the control group; SNP: Single nucleotide polymorphism; Indel: Insertion or deletion; TTC5: Tetratricopeptide repeat domain 5; PARP2: Poly (ADP-ribose) polymerase 2; TEP1: Telomerase associated protein 1; MAPK8IP3: Mitogen-activated protein kinase 8 interacting protein 3; PFAS: Phosphoribosylformylglycinamidine synthase; RECQL5: RecQ like helicase 5; SLC5A3: Solute carrier family 5 member 3; ERCC6L2: ERCC excision repair 6 like 2; PER1: Period circadian regulator 1; CHFR: Checkpoint with forkhead and ring finger domains.
Baseline clinical information
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| Age (years), mean ± SD | 65.6 ± 9.1 | 65.8 ± 10.4 | 0.62 |
| Sex, | |||
| Male | 72.7 | 59.1 | 0.2136 |
| Female | 27.3 | 40.9 | |
| Smoking, | 14.0 | 4.6 | 0.3190 |
| Drinking, | 7.0 | 0 | 0.3668 |
| Hypertension, | 34.3 | 40.9 | 0.6361 |
| Diabetes, | 8.1 | 13.6 | 0.4171 |
| Hemodynamics before lavage, mean ± SD | |||
| Heart rate (bpm) | 61 ± 10 | 62 ± 13 | 0.511 |
| Diastolic pressure (mmHg) | 66 ± 10 | 65 ± 12 | 0.6207 |
| Systolic pressure (mmHg) | 122 ± 18 | 119 ± 19 | 0.3159 |
| Hemodynamics after lavage, mean ± SD | |||
| Heart rate (bpm) | 56 ± 12 | 27 ± 20 | < 0.0001 |
| Diastolic pressure (mmHg) | 76 ± 14 | 53 ± 23 | < 0.0001 |
| Systolic pressure (mmHg) | 141 ± 24 | 92 ± 48 | < 0.0001 |
| Change in heart rate (%), mean ± SD | 8.3 ± 12.4 | 59.3 ± 27.7 | < 0.0001 |
| Change in diastolic pressure (mmHg), mean ± SD | 10.0 ± 13.1 | -11.8 ± 18.9 | < 0.0001 |
| Change in systolic pressure (mmHg), mean ± SD | 17.5 ± 21.8 | -26.0 ± 41.5 | < 0.0001 |
HR: Heart rate; SD: Standard deviation.
Allele frequency and genotype frequency in the two groups
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| TEP1 (rs938886), | |||
| C | 14 (0.32) | 105 (0.31) | 0.8608 |
| G | 30 (0.68) | 239 (0.70) | |
| CC | 1 (0.05) | 16 (0.09) | 0.5022 |
| CG | 12 (0.55) | 73 (0.42) | |
| GG | 9 (0.41) | 83 (0.48) | |
| HWE | 0.2278 | 0.9929 | |
| TEP1 (rs1713449), | |||
| C | 30 (0.68) | 236 (0.69) | 0.9546 |
| T | 14 (0.32) | 108 (0.31) | |
| CC | 9 (0.41) | 82 (0.48) | 0.4465 |
| CT | 12 (0.55) | 72 (0.42) | |
| TT | 1 (0.05) | 18 (0.11) | |
| HWE | 0.2278 | 0.7110 | |
| RECQL5 (rs820196), | |||
| C | 16 (0.36) | 109 (0.32) | 0.5319 |
| T | 28 (0.64) | 235 (0.68) | |
| CC | 1 (0.05) | 19 (0.11) | 0.1292 |
| CT | 14 (0.64) | 71 (0.41) | |
| TT | 7 (0.32) | 82 (0.48) | |
| HWE | 0.0787 | 0.5420 |
HR: Heart rate; HWE: Fisher’s P value of Hardy-Weinberg equilibrium test.
Figure 1Linkage disequilibrium test. A and B: D' values (A) and r2 values (B) both indicated strong linkage disequilibrium between TEP1 (rs938886) and TEP1 (rs1713449).
Haplotype analysis
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| CTC | 0.00 (0.00) | 40.98 (0.12) | 0.025601 | 0.000 (0.000-0.008) |
| CTT | 14.00 (0.32) | 64.02 (0.19) | 0.042935 | 2.018 (1.012-4.025) |
| GCC | 16.00 (0.36) | 68.02 (0.20) | 0.013161 | 2.293 (1.174-4.477) |
| GCT | 14.00 (0.32) | 167.98 (0.49) | 0.029281 | 0.481 (0.246-0.939) |
| GTT | 0.00 (0.00) | 3.00 (0.01) | - | - |
All frequencies < 0.03 were ignored in the analysis. Loci selected for the hap-analysis: TEP1 (rs938886), TEP1 (rs1713449), and RECQL5 (rs820196). HR: Heart rate; CI: Confidence interval.