Literature DB >> 33643252

Proteome-Wide Analysis of Lysine 2-Hydroxyisobutyrylated Proteins in Fusarium oxysporum.

Hengwei Qian1,2, Lulu Wang1, Xianliang Ma3, Xingling Yi3, Baoshan Wang2, Wenxing Liang1.   

Abstract

Protein lysine 2-hydroxyisobutyrylation (K hib ), a new type of post-translational modification, occurs in histones and non-histone proteins and plays an important role in almost all aspects of both eukaryotic and prokaryotic living cells. Fusarium oxysporum, a soil-borne fungal pathogen, can cause disease in more than 150 plants. However, little is currently known about the functions of K hib in this plant pathogenic fungus. Here, we report a systematic analysis of 2-hydroxyisobutyrylated proteins in F. oxysporum. In this study, 3782 K hib sites in 1299 proteins were identified in F. oxysporum. The bioinformatics analysis showed that 2-hydroxyisobutyrylated proteins are involved in different biological processes and functions and are located in diverse subcellular localizations. The enrichment analysis revealed that K hib participates in a variety of pathways, including the ribosome, oxidative phosphorylation, and proteasome pathways. The protein interaction network analysis showed that 2-hydroxyisobutyrylated protein complexes are involved in diverse interactions. Notably, several 2-hydroxyisobutyrylated proteins, including three kinds of protein kinases, were involved in the virulence or conidiation of F. oxysporum, suggesting that K hib plays regulatory roles in pathogenesis. Moreover, our study shows that there are different K hib levels of F. oxysporum in conidial and mycelial stages. These findings provide evidence of K hib in F. oxysporum, an important filamentous plant pathogenic fungus, and serve as a resource for further exploration of the potential functions of K hib in Fusarium species and other filamentous pathogenic fungi.
Copyright © 2021 Qian, Wang, Ma, Yi, Wang and Liang.

Entities:  

Keywords:  Fusarium oxysporum; lysine 2-hydroxyisobutyrylation; post-translational modification; proteomics; virulence

Year:  2021        PMID: 33643252      PMCID: PMC7902869          DOI: 10.3389/fmicb.2021.623735

Source DB:  PubMed          Journal:  Front Microbiol        ISSN: 1664-302X            Impact factor:   5.640


  51 in total

Review 1.  Mitogen-activated protein kinase signaling in plant-interacting fungi: distinct messages from conserved messengers.

Authors:  Louis-Philippe Hamel; Marie-Claude Nicole; Sébastien Duplessis; Brian E Ellis
Journal:  Plant Cell       Date:  2012-04-18       Impact factor: 11.277

2.  Quantitative assessment of chromatin immunoprecipitation grade antibodies directed against histone modifications reveals patterns of co-occurring marks on histone protein molecules.

Authors:  Sally E Peach; Emily L Rudomin; Namrata D Udeshi; Steven A Carr; Jacob D Jaffe
Journal:  Mol Cell Proteomics       Date:  2012-03-21       Impact factor: 5.911

3.  Molecular Coupling of Histone Crotonylation and Active Transcription by AF9 YEATS Domain.

Authors:  Yuanyuan Li; Benjamin R Sabari; Tatyana Panchenko; Hong Wen; Dan Zhao; Haipeng Guan; Liling Wan; He Huang; Zhanyun Tang; Yingming Zhao; Robert G Roeder; Xiaobing Shi; C David Allis; Haitao Li
Journal:  Mol Cell       Date:  2016-04-21       Impact factor: 17.970

4.  NetSurfP-2.0: Improved prediction of protein structural features by integrated deep learning.

Authors:  Michael Schantz Klausen; Martin Closter Jespersen; Henrik Nielsen; Kamilla Kjaergaard Jensen; Vanessa Isabell Jurtz; Casper Kaae Sønderby; Morten Otto Alexander Sommer; Ole Winther; Morten Nielsen; Bent Petersen; Paolo Marcatili
Journal:  Proteins       Date:  2019-03-09

5.  Intracellular crotonyl-CoA stimulates transcription through p300-catalyzed histone crotonylation.

Authors:  Benjamin R Sabari; Zhanyun Tang; He Huang; Vladimir Yong-Gonzalez; Henrik Molina; Ha Eun Kong; Lunzhi Dai; Miho Shimada; Justin R Cross; Yingming Zhao; Robert G Roeder; C David Allis
Journal:  Mol Cell       Date:  2015-03-26       Impact factor: 17.970

6.  SnapShot: histone modifications.

Authors:  He Huang; Benjamin R Sabari; Benjamin A Garcia; C David Allis; Yingming Zhao
Journal:  Cell       Date:  2014-10-09       Impact factor: 41.582

7.  Role of the phosphatase Ptc1 in stress responses mediated by CWI and HOG pathways in Fusarium oxysporum.

Authors:  Pedro Lemos; Carmen Ruiz-Roldán; Concepción Hera
Journal:  Fungal Genet Biol       Date:  2018-06-02       Impact factor: 3.495

8.  Lysine glutarylation is a protein posttranslational modification regulated by SIRT5.

Authors:  Minjia Tan; Chao Peng; Kristin A Anderson; Peter Chhoy; Zhongyu Xie; Lunzhi Dai; Jeongsoon Park; Yue Chen; He Huang; Yi Zhang; Jennifer Ro; Gregory R Wagner; Michelle F Green; Andreas S Madsen; Jessica Schmiesing; Brett S Peterson; Guofeng Xu; Olga R Ilkayeva; Michael J Muehlbauer; Thomas Braulke; Chris Mühlhausen; Donald S Backos; Christian A Olsen; Peter J McGuire; Scott D Pletcher; David B Lombard; Matthew D Hirschey; Yingming Zhao
Journal:  Cell Metab       Date:  2014-04-01       Impact factor: 27.287

9.  DAVID-WS: a stateful web service to facilitate gene/protein list analysis.

Authors:  Xiaoli Jiao; Brad T Sherman; Da Wei Huang; Robert Stephens; Michael W Baseler; H Clifford Lane; Richard A Lempicki
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

10.  Proteome-wide analysis of lysine acetylation in the plant pathogen Botrytis cinerea.

Authors:  Binna Lv; Qianqian Yang; Delong Li; Wenxing Liang; Limin Song
Journal:  Sci Rep       Date:  2016-07-06       Impact factor: 4.379

View more
  2 in total

1.  Quantitative multiplexed proteomics analysis reveals reshaping of the lysine 2-hydroxyisobutyrylome in Fusarium graminearum by tebuconazole.

Authors:  Yanxiang Zhao; Limin Zhang; Chao Ju; Xiaoyan Zhang; Jinguang Huang
Journal:  BMC Genomics       Date:  2022-02-18       Impact factor: 3.969

2.  Proteome-wide analysis of lysine 2-hydroxyisobutyrylation in Frankliniella occidentalis.

Authors:  Chengying Ding; Liyun Song; Ying Li; Lili Shen; Dongyang Liu; Fenglong Wang; Zhonglong Lin; Jinguang Yang
Journal:  BMC Genomics       Date:  2022-08-29       Impact factor: 4.547

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.