Literature DB >> 33640383

Recent advances in organoid development and applications in disease modeling.

Sanchita Rauth1, Saswati Karmakar1, Surinder K Batra2, Moorthy P Ponnusamy3.   

Abstract

An improved understanding of stem cell niches, organogenesis, and disease models has paved the way for developing a three-dimensional (3D) organoid culture system. Organoid cultures can be derived from primary tissues (single cells or tissue subunits), adult stem cells (ASCs), induced pluripotent stem cells (iPSCs), or embryonic stem cells (ESCs). As a significant technological breakthrough, 3D organoid models offer a promising approach for understanding the complexities of human diseases ranging from the mechanistic investigation of disease pathogenesis to therapy. Here, we discuss the recent applications, advantages, and limitations of organoids as in vitro models for studying metabolomics, drug development, infectious diseases, and the gut microbiome. We further discuss the use of organoids in cancer modeling using high throughput sequencing approaches. Published by Elsevier B.V.

Entities:  

Keywords:  Disease modeling; Gut MIcrobiota; Metabolism; Organoids; Tumor microenvironment

Mesh:

Year:  2021        PMID: 33640383      PMCID: PMC8068668          DOI: 10.1016/j.bbcan.2021.188527

Source DB:  PubMed          Journal:  Biochim Biophys Acta Rev Cancer        ISSN: 0304-419X            Impact factor:   10.680


  142 in total

1.  A bioassay to measure energy metabolism in mouse colonic crypts, organoids, and sorted stem cells.

Authors:  Yang-Yi Fan; Laurie A Davidson; Evelyn S Callaway; Gus A Wright; Stephen Safe; Robert S Chapkin
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2015-05-14       Impact factor: 4.052

2.  Genome sequencing of normal cells reveals developmental lineages and mutational processes.

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Journal:  Nature       Date:  2014-06-29       Impact factor: 49.962

Review 3.  Human Models Are Needed for Studying Human Neurodevelopmental Disorders.

Authors:  Xinyu Zhao; Anita Bhattacharyya
Journal:  Am J Hum Genet       Date:  2018-12-06       Impact factor: 11.025

4.  Modeling of Fibrotic Lung Disease Using 3D Organoids Derived from Human Pluripotent Stem Cells.

Authors:  Alexandros Strikoudis; Anna Cieślak; Lucas Loffredo; Ya-Wen Chen; Nina Patel; Anjali Saqi; David J Lederer; Hans-Willem Snoeck
Journal:  Cell Rep       Date:  2019-06-18       Impact factor: 9.423

5.  Zika virus impairs growth in human neurospheres and brain organoids.

Authors:  Patricia P Garcez; Erick Correia Loiola; Rodrigo Madeiro da Costa; Luiza M Higa; Pablo Trindade; Rodrigo Delvecchio; Juliana Minardi Nascimento; Rodrigo Brindeiro; Amilcar Tanuri; Stevens K Rehen
Journal:  Science       Date:  2016-04-10       Impact factor: 47.728

6.  Characterizing responses to CFTR-modulating drugs using rectal organoids derived from subjects with cystic fibrosis.

Authors:  Johanna F Dekkers; Gitte Berkers; Evelien Kruisselbrink; Annelotte Vonk; Hugo R de Jonge; Hettie M Janssens; Inez Bronsveld; Eduard A van de Graaf; Edward E S Nieuwenhuis; Roderick H J Houwen; Frank P Vleggaar; Johanna C Escher; Yolanda B de Rijke; Christof J Majoor; Harry G M Heijerman; Karin M de Winter-de Groot; Hans Clevers; Cornelis K van der Ent; Jeffrey M Beekman
Journal:  Sci Transl Med       Date:  2016-06-22       Impact factor: 17.956

7.  Interaction of Salmonella enterica Serovar Typhimurium with Intestinal Organoids Derived from Human Induced Pluripotent Stem Cells.

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Journal:  Infect Immun       Date:  2015-05-11       Impact factor: 3.441

8.  Long-term culture of genome-stable bipotent stem cells from adult human liver.

Authors:  Meritxell Huch; Helmuth Gehart; Ruben van Boxtel; Karien Hamer; Francis Blokzijl; Monique M A Verstegen; Ewa Ellis; Martien van Wenum; Sabine A Fuchs; Joep de Ligt; Marc van de Wetering; Nobuo Sasaki; Susanne J Boers; Hans Kemperman; Jeroen de Jonge; Jan N M Ijzermans; Edward E S Nieuwenhuis; Ruurdtje Hoekstra; Stephen Strom; Robert R G Vries; Luc J W van der Laan; Edwin Cuppen; Hans Clevers
Journal:  Cell       Date:  2014-12-18       Impact factor: 41.582

9.  Modelling Cryptosporidium infection in human small intestinal and lung organoids.

Authors:  Inha Heo; Devanjali Dutta; Deborah A Schaefer; Nino Iakobachvili; Benedetta Artegiani; Norman Sachs; Kim E Boonekamp; Gregory Bowden; Antoni P A Hendrickx; Robert J L Willems; Peter J Peters; Michael W Riggs; Roberta O'Connor; Hans Clevers
Journal:  Nat Microbiol       Date:  2018-06-25       Impact factor: 17.745

10.  Human cerebral organoids recapitulate gene expression programs of fetal neocortex development.

Authors:  J Gray Camp; Farhath Badsha; Marta Florio; Sabina Kanton; Tobias Gerber; Michaela Wilsch-Bräuninger; Eric Lewitus; Alex Sykes; Wulf Hevers; Madeline Lancaster; Juergen A Knoblich; Robert Lachmann; Svante Pääbo; Wieland B Huttner; Barbara Treutlein
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-07       Impact factor: 11.205

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  9 in total

1.  [Establishment of a culture system for human nasal mucosa organoids with controllable differentiation].

Authors:  K Wang; Y Yu; R Han; X Wang; Y Zhao; H Tang; G Li
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2022-06-20

2.  Muc16 depletion diminishes KRAS-induced tumorigenesis and metastasis by altering tumor microenvironment factors in pancreatic ductal adenocarcinoma.

Authors:  Imayavaramban Lakshmanan; Saravanakumar Marimuthu; Sanjib Chaudhary; Parthasarathy Seshacharyulu; Satyanarayana Rachagani; Sakthivel Muniyan; Ramakanth Chirravuri-Venkata; Pranita Atri; Sanchita Rauth; Rama Krishna Nimmakayala; Jawed Akhtar Siddiqui; Shailendra K Gautam; Ashu Shah; Gopalakrishnan Natarajan; Seema Parte; Namita Bhyravbhatla; Kavita Mallya; Dhanya Haridas; Geoffrey A Talmon; Lynette M Smith; Sushil Kumar; Apar Kishor Ganti; Maneesh Jain; Moorthy P Ponnusamy; Surinder K Batra
Journal:  Oncogene       Date:  2022-10-21       Impact factor: 8.756

3.  Using genetically encoded fluorescent biosensors to interrogate ovarian cancer metabolism.

Authors:  Shree Bose; Haipei Yao; Qiang Huang; Regina Whitaker; Christopher D Kontos; Rebecca A Previs; Xiling Shen
Journal:  J Ovarian Res       Date:  2022-10-20       Impact factor: 5.506

Review 4.  Basic approaches, challenges and opportunities for the discovery of small molecule anti-tumor drugs.

Authors:  Yu-Shui Ma; Ji-Bin Liu; Xiao-Li Yang; Rui Xin; Yi Shi; Dan-Dan Zhang; Hui-Min Wang; Pei-Yao Wang; Qin-Lu Lin; Wen Li; Da Fu
Journal:  Am J Cancer Res       Date:  2021-06-15       Impact factor: 6.166

Review 5.  Tumor organoids: synergistic applications, current challenges, and future prospects in cancer therapy.

Authors:  Jingjing Qu; Farhin Shaheed Kalyani; Li Liu; Tianli Cheng; Lijun Chen
Journal:  Cancer Commun (Lond)       Date:  2021-10-29

Review 6.  3D and organoid culture in research: physiology, hereditary genetic diseases and cancer.

Authors:  Elisa Suarez-Martinez; Irene Suazo-Sanchez; Manuel Celis-Romero; Amancio Carnero
Journal:  Cell Biosci       Date:  2022-04-01       Impact factor: 7.133

7.  Culture of patient-derived multicellular clusters in suspended hydrogel capsules for pre-clinical personalized drug screening.

Authors:  Haijiang Dong; Zequn Li; Suchen Bian; Guangyuan Song; Wenfeng Song; Mingqi Zhang; Haiyang Xie; Shusen Zheng; Xuxu Yang; Tiefeng Li; Penghong Song
Journal:  Bioact Mater       Date:  2022-03-19

Review 8.  3D Cell Cultures: Evolution of an Ancient Tool for New Applications.

Authors:  Andrea Cacciamali; Riccardo Villa; Silvia Dotti
Journal:  Front Physiol       Date:  2022-07-22       Impact factor: 4.755

Review 9.  A pancreas tumor derived organoid study: from drug screen to precision medicine.

Authors:  Jia Yao; Man Yang; Lawrence Atteh; Pinyan Liu; Yongcui Mao; Wenbo Meng; Xun Li
Journal:  Cancer Cell Int       Date:  2021-07-27       Impact factor: 5.722

  9 in total

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