Literature DB >> 33637762

A molecular quantitative trait locus map for osteoarthritis.

J Mark Wilkinson1,2, Eleftheria Zeggini3,4,5, Julia Steinberg6,7,8,9, Lorraine Southam6,8, Theodoros I Roumeliotis8,10, Matthew J Clark11, Raveen L Jayasuriya11, Diane Swift11, Karan M Shah11, Natalie C Butterfield12, Roger A Brooks13, Andrew W McCaskie13, J H Duncan Bassett12, Graham R Williams12, Jyoti S Choudhary8,10.   

Abstract

Osteoarthritis causes pain and functional disability for over 500 million people worldwide. To develop disease-stratifying tools and modifying therapies, we need a better understanding of the molecular basis of the disease in relevant tissue and cell types. Here, we study primary cartilage and synovium from 115 patients with osteoarthritis to construct a deep molecular signature map of the disease. By integrating genetics with transcriptomics and proteomics, we discover molecular trait loci in each tissue type and omics level, identify likely effector genes for osteoarthritis-associated genetic signals and highlight high-value targets for drug development and repurposing. These findings provide insights into disease aetiopathology, and offer translational opportunities in response to the global clinical challenge of osteoarthritis.

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Year:  2021        PMID: 33637762      PMCID: PMC7910531          DOI: 10.1038/s41467-021-21593-7

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  47 in total

Review 1.  Hand osteoarthritis, menopause and menopausal hormone therapy.

Authors:  Fiona E Watt
Journal:  Maturitas       Date:  2015-10-01       Impact factor: 4.342

2.  A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles.

Authors:  Aravind Subramanian; Rajiv Narayan; Steven M Corsello; David D Peck; Ted E Natoli; Xiaodong Lu; Joshua Gould; John F Davis; Andrew A Tubelli; Jacob K Asiedu; David L Lahr; Jodi E Hirschman; Zihan Liu; Melanie Donahue; Bina Julian; Mariya Khan; David Wadden; Ian C Smith; Daniel Lam; Arthur Liberzon; Courtney Toder; Mukta Bagul; Marek Orzechowski; Oana M Enache; Federica Piccioni; Sarah A Johnson; Nicholas J Lyons; Alice H Berger; Alykhan F Shamji; Angela N Brooks; Anita Vrcic; Corey Flynn; Jacqueline Rosains; David Y Takeda; Roger Hu; Desiree Davison; Justin Lamb; Kristin Ardlie; Larson Hogstrom; Peyton Greenside; Nathanael S Gray; Paul A Clemons; Serena Silver; Xiaoyun Wu; Wen-Ning Zhao; Willis Read-Button; Xiaohua Wu; Stephen J Haggarty; Lucienne V Ronco; Jesse S Boehm; Stuart L Schreiber; John G Doench; Joshua A Bittker; David E Root; Bang Wong; Todd R Golub
Journal:  Cell       Date:  2017-11-30       Impact factor: 41.582

3.  Lifetime risk of symptomatic knee osteoarthritis.

Authors:  Louise Murphy; Todd A Schwartz; Charles G Helmick; Jordan B Renner; Gail Tudor; Gary Koch; Anca Dragomir; William D Kalsbeek; Gheorghe Luta; Joanne M Jordan
Journal:  Arthritis Rheum       Date:  2008-09-15

4.  All cause and disease specific mortality in patients with knee or hip osteoarthritis: population based cohort study.

Authors:  Eveline Nüesch; Paul Dieppe; Stephan Reichenbach; Susan Williams; Samuel Iff; Peter Jüni
Journal:  BMJ       Date:  2011-03-08

5.  Integrative epigenomics, transcriptomics and proteomics of patient chondrocytes reveal genes and pathways involved in osteoarthritis.

Authors:  Julia Steinberg; Graham R S Ritchie; Theodoros I Roumeliotis; Raveen L Jayasuriya; Matthew J Clark; Roger A Brooks; Abbie L A Binch; Karan M Shah; Rachael Coyle; Mercedes Pardo; Christine L Le Maitre; Yolande F M Ramos; Rob G H H Nelissen; Ingrid Meulenbelt; Andrew W McCaskie; Jyoti S Choudhary; J Mark Wilkinson; Eleftheria Zeggini
Journal:  Sci Rep       Date:  2017-08-21       Impact factor: 4.379

6.  RNA sequencing data integration reveals an miRNA interactome of osteoarthritis cartilage.

Authors:  Rodrigo Coutinho de Almeida; Yolande F M Ramos; Ahmed Mahfouz; Wouter den Hollander; Nico Lakenberg; Evelyn Houtman; Marcella van Hoolwerff; H Eka D Suchiman; Alejandro Rodríguez Ruiz; P Eline Slagboom; Hailiang Mei; Szymon M Kiełbasa; Rob G H H Nelissen; Marcel Reinders; Ingrid Meulenbelt
Journal:  Ann Rheum Dis       Date:  2018-12-01       Impact factor: 19.103

Review 7.  Osteoarthritis associated with estrogen deficiency.

Authors:  Jorge A Roman-Blas; Santos Castañeda; Raquel Largo; Gabriel Herrero-Beaumont
Journal:  Arthritis Res Ther       Date:  2009-09-21       Impact factor: 5.156

8.  Integrative analysis of 111 reference human epigenomes.

Authors:  Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi-Moussavi; Pouya Kheradpour; Zhizhuo Zhang; Jianrong Wang; Michael J Ziller; Viren Amin; John W Whitaker; Matthew D Schultz; Lucas D Ward; Abhishek Sarkar; Gerald Quon; Richard S Sandstrom; Matthew L Eaton; Yi-Chieh Wu; Andreas R Pfenning; Xinchen Wang; Melina Claussnitzer; Yaping Liu; Cristian Coarfa; R Alan Harris; Noam Shoresh; Charles B Epstein; Elizabeta Gjoneska; Danny Leung; Wei Xie; R David Hawkins; Ryan Lister; Chibo Hong; Philippe Gascard; Andrew J Mungall; Richard Moore; Eric Chuah; Angela Tam; Theresa K Canfield; R Scott Hansen; Rajinder Kaul; Peter J Sabo; Mukul S Bansal; Annaick Carles; Jesse R Dixon; Kai-How Farh; Soheil Feizi; Rosa Karlic; Ah-Ram Kim; Ashwinikumar Kulkarni; Daofeng Li; Rebecca Lowdon; GiNell Elliott; Tim R Mercer; Shane J Neph; Vitor Onuchic; Paz Polak; Nisha Rajagopal; Pradipta Ray; Richard C Sallari; Kyle T Siebenthall; Nicholas A Sinnott-Armstrong; Michael Stevens; Robert E Thurman; Jie Wu; Bo Zhang; Xin Zhou; Arthur E Beaudet; Laurie A Boyer; Philip L De Jager; Peggy J Farnham; Susan J Fisher; David Haussler; Steven J M Jones; Wei Li; Marco A Marra; Michael T McManus; Shamil Sunyaev; James A Thomson; Thea D Tlsty; Li-Huei Tsai; Wei Wang; Robert A Waterland; Michael Q Zhang; Lisa H Chadwick; Bradley E Bernstein; Joseph F Costello; Joseph R Ecker; Martin Hirst; Alexander Meissner; Aleksandar Milosavljevic; Bing Ren; John A Stamatoyannopoulos; Ting Wang; Manolis Kellis
Journal:  Nature       Date:  2015-02-19       Impact factor: 69.504

9.  Genes involved in the osteoarthritis process identified through genome wide expression analysis in articular cartilage; the RAAK study.

Authors:  Yolande F M Ramos; Wouter den Hollander; Judith V M G Bovée; Nils Bomer; Ruud van der Breggen; Nico Lakenberg; J Christiaan Keurentjes; Jelle J Goeman; P Eline Slagboom; Rob G H H Nelissen; Steffan D Bos; Ingrid Meulenbelt
Journal:  PLoS One       Date:  2014-07-23       Impact factor: 3.240

10.  Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.

Authors:  Ioanna Tachmazidou; Konstantinos Hatzikotoulas; Lorraine Southam; Jorge Esparza-Gordillo; Valeriia Haberland; Jie Zheng; Toby Johnson; Mine Koprulu; Eleni Zengini; Julia Steinberg; Jeremy M Wilkinson; Sahir Bhatnagar; Joshua D Hoffman; Natalie Buchan; Dániel Süveges; Laura Yerges-Armstrong; George Davey Smith; Tom R Gaunt; Robert A Scott; Linda C McCarthy; Eleftheria Zeggini
Journal:  Nat Genet       Date:  2019-01-21       Impact factor: 38.330

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  7 in total

1.  A molecular map of long non-coding RNA expression, isoform switching and alternative splicing in osteoarthritis.

Authors:  Georgia Katsoula; Julia Steinberg; Margo Tuerlings; Rodrigo Coutinho de Almeida; Lorraine Southam; Diane Swift; Ingrid Meulenbelt; J Mark Wilkinson; Eleftheria Zeggini
Journal:  Hum Mol Genet       Date:  2022-06-22       Impact factor: 5.121

Review 2.  Insights into the molecular landscape of osteoarthritis in human tissues.

Authors:  Georgia Katsoula; Peter Kreitmaier; Eleftheria Zeggini
Journal:  Curr Opin Rheumatol       Date:  2022-01-01       Impact factor: 5.006

Review 3.  Osteoarthritis year in review: genetics, genomics, epigenetics.

Authors:  D A Young; M J Barter; J Soul
Journal:  Osteoarthritis Cartilage       Date:  2021-11-11       Impact factor: 6.576

4.  Cell-free fat extract attenuates osteoarthritis via chondrocytes regeneration and macrophages immunomodulation.

Authors:  Zhuoxuan Jia; Bijun Kang; Yizuo Cai; Chingyu Chen; Zheyuan Yu; Wei Li; Wenjie Zhang
Journal:  Stem Cell Res Ther       Date:  2022-04-01       Impact factor: 6.832

5.  An epigenome-wide view of osteoarthritis in primary tissues.

Authors:  Peter Kreitmaier; Matthew Suderman; Lorraine Southam; Rodrigo Coutinho de Almeida; Konstantinos Hatzikotoulas; Ingrid Meulenbelt; Julia Steinberg; Caroline L Relton; J Mark Wilkinson; Eleftheria Zeggini
Journal:  Am J Hum Genet       Date:  2022-06-08       Impact factor: 11.043

6.  Identification of TMEM129, encoding a ubiquitin-protein ligase, as an effector gene of osteoarthritis genetic risk.

Authors:  Abby Brumwell; Guillaume Aubourg; Juhel Hussain; Eleanor Parker; David J Deehan; Sarah J Rice; John Loughlin
Journal:  Arthritis Res Ther       Date:  2022-08-08       Impact factor: 5.606

7.  Distinct Concentration-Dependent Molecular Pathways Regulate Bone Cell Responses to Cobalt and Chromium Exposure from Joint Replacement Prostheses.

Authors:  Karan M Shah; Mark J Dunning; Alison Gartland; J Mark Wilkinson
Journal:  Int J Mol Sci       Date:  2021-05-14       Impact factor: 5.923

  7 in total

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