Literature DB >> 33636129

In vivo CD8+ T cell CRISPR screening reveals control by Fli1 in infection and cancer.

Zeyu Chen1, Eri Arai2, Omar Khan3, Zhen Zhang4, Shin Foong Ngiow5, Yuan He6, Hua Huang7, Sasikanth Manne3, Zhendong Cao2, Amy E Baxter3, Zhangying Cai3, Elizabeth Freilich8, Mohammed A Ali3, Josephine R Giles3, Jennifer E Wu3, Allison R Greenplate3, Mohamed A Hakeem3, Qingzhou Chen2, Makoto Kurachi3, Kito Nzingha3, Viktoriya Ekshyyan3, Divij Mathew3, Zhuoyu Wen8, Nancy A Speck9, Alexis Battle10, Shelley L Berger4, E John Wherry11, Junwei Shi12.   

Abstract

Improving effector activity of antigen-specific T cells is a major goal in cancer immunotherapy. Despite the identification of several effector T cell (TEFF)-driving transcription factors (TFs), the transcriptional coordination of TEFF biology remains poorly understood. We developed an in vivo T cell CRISPR screening platform and identified a key mechanism restraining TEFF biology through the ETS family TF, Fli1. Genetic deletion of Fli1 enhanced TEFF responses without compromising memory or exhaustion precursors. Fli1 restrained TEFF lineage differentiation by binding to cis-regulatory elements of effector-associated genes. Loss of Fli1 increased chromatin accessibility at ETS:RUNX motifs, allowing more efficient Runx3-driven TEFF biology. CD8+ T cells lacking Fli1 provided substantially better protection against multiple infections and tumors. These data indicate that Fli1 safeguards the developing CD8+ T cell transcriptional landscape from excessive ETS:RUNX-driven TEFF cell differentiation. Moreover, genetic deletion of Fli1 improves TEFF differentiation and protective immunity in infections and cancer.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CD8; CRISPR; Fli1; cancer; chronic infection; effector CD8 T cell; exhausted CD8 T cell; exhaustion; immunotherapy; protective immunity

Mesh:

Substances:

Year:  2021        PMID: 33636129      PMCID: PMC8054351          DOI: 10.1016/j.cell.2021.02.019

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  103 in total

1.  A major chromatin regulator determines resistance of tumor cells to T cell-mediated killing.

Authors:  Deng Pan; Aya Kobayashi; Peng Jiang; Lucas Ferrari de Andrade; Rong En Tay; Adrienne M Luoma; Daphne Tsoucas; Xintao Qiu; Klothilda Lim; Prakash Rao; Henry W Long; Guo-Cheng Yuan; John Doench; Myles Brown; X Shirley Liu; Kai W Wucherpfennig
Journal:  Science       Date:  2018-01-04       Impact factor: 47.728

Review 2.  CD8 T Cell Exhaustion During Chronic Viral Infection and Cancer.

Authors:  Laura M McLane; Mohamed S Abdel-Hakeem; E John Wherry
Journal:  Annu Rev Immunol       Date:  2019-01-24       Impact factor: 28.527

3.  Targeted in situ genome-wide profiling with high efficiency for low cell numbers.

Authors:  Peter J Skene; Jorja G Henikoff; Steven Henikoff
Journal:  Nat Protoc       Date:  2018-04-12       Impact factor: 13.491

4.  Transcriptional repression of the RUNX3/AML2 gene by the t(8;21) and inv(16) fusion proteins in acute myeloid leukemia.

Authors:  Chi Keung Cheng; Libby Li; Suk Hang Cheng; Kin Mang Lau; Natalie P H Chan; Raymond S M Wong; Matthew M K Shing; Chi Kong Li; Margaret H L Ng
Journal:  Blood       Date:  2008-07-28       Impact factor: 22.113

5.  Epigenomic-Guided Mass Cytometry Profiling Reveals Disease-Specific Features of Exhausted CD8 T Cells.

Authors:  Bertram Bengsch; Takuya Ohtani; Omar Khan; Manu Setty; Sasikanth Manne; Shaun O'Brien; Pier Federico Gherardini; Ramin Sedaghat Herati; Alexander C Huang; Kyong-Mi Chang; Evan W Newell; Niels Bovenschen; Dana Pe'er; Steven M Albelda; E John Wherry
Journal:  Immunity       Date:  2018-05-15       Impact factor: 31.745

6.  Bystander CD8+ T cells are abundant and phenotypically distinct in human tumour infiltrates.

Authors:  Yannick Simoni; Etienne Becht; Michael Fehlings; Chiew Yee Loh; Si-Lin Koo; Karen Wei Weng Teng; Joe Poh Sheng Yeong; Rahul Nahar; Tong Zhang; Hassen Kared; Kaibo Duan; Nicholas Ang; Michael Poidinger; Yin Yeng Lee; Anis Larbi; Alexis J Khng; Emile Tan; Cherylin Fu; Ronnie Mathew; Melissa Teo; Wan Teck Lim; Chee Keong Toh; Boon-Hean Ong; Tina Koh; Axel M Hillmer; Angela Takano; Tony Kiat Hon Lim; Eng Huat Tan; Weiwei Zhai; Daniel S W Tan; Iain Beehuat Tan; Evan W Newell
Journal:  Nature       Date:  2018-05-16       Impact factor: 49.962

7.  4-1BB costimulation ameliorates T cell exhaustion induced by tonic signaling of chimeric antigen receptors.

Authors:  Adrienne H Long; Waleed M Haso; Jack F Shern; Kelsey M Wanhainen; Meera Murgai; Maria Ingaramo; Jillian P Smith; Alec J Walker; M Eric Kohler; Vikas R Venkateshwara; Rosandra N Kaplan; George H Patterson; Terry J Fry; Rimas J Orentas; Crystal L Mackall
Journal:  Nat Med       Date:  2015-05-04       Impact factor: 53.440

8.  TOX is a critical regulator of tumour-specific T cell differentiation.

Authors:  Andrew C Scott; Friederike Dündar; Paul Zumbo; Smita S Chandran; Christopher A Klebanoff; Mojdeh Shakiba; Prerak Trivedi; Laura Menocal; Heather Appleby; Steven Camara; Dmitriy Zamarin; Tyler Walther; Alexandra Snyder; Matthew R Femia; Elizabeth A Comen; Hannah Y Wen; Matthew D Hellmann; Niroshana Anandasabapathy; Yong Liu; Nasser K Altorki; Peter Lauer; Olivier Levy; Michael S Glickman; Jonathan Kaye; Doron Betel; Mary Philip; Andrea Schietinger
Journal:  Nature       Date:  2019-06-17       Impact factor: 49.962

9.  Chromatin states define tumour-specific T cell dysfunction and reprogramming.

Authors:  Mary Philip; Lauren Fairchild; Liping Sun; Ellen L Horste; Steven Camara; Mojdeh Shakiba; Andrew C Scott; Agnes Viale; Peter Lauer; Taha Merghoub; Matthew D Hellmann; Jedd D Wolchok; Christina S Leslie; Andrea Schietinger
Journal:  Nature       Date:  2017-05-17       Impact factor: 49.962

10.  Batf Pioneers the Reorganization of Chromatin in Developing Effector T Cells via Ets1-Dependent Recruitment of Ctcf.

Authors:  Duy Pham; Carson E Moseley; Min Gao; Daniel Savic; Colleen J Winstead; Mengxi Sun; Barbara L Kee; Richard M Myers; Casey T Weaver; Robin D Hatton
Journal:  Cell Rep       Date:  2019-10-29       Impact factor: 9.423

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  25 in total

Review 1.  Current insights into the role of Fli-1 in hematopoiesis and malignant transformation.

Authors:  Yaacov Ben-David; Babu Gajendran; Klarke M Sample; Eldad Zacksenhaus
Journal:  Cell Mol Life Sci       Date:  2022-02-28       Impact factor: 9.261

2.  Pre-encoded responsiveness to type I interferon in the peripheral immune system defines outcome of PD1 blockade therapy.

Authors:  Giselle M Boukhaled; Ramy Gadalla; Heidi J Elsaesser; Diala Abd-Rabbo; Rene Quevedo; S Y Cindy Yang; Mengdi Guo; Ben X Wang; Babak Noamani; Diana Gray; Sally C M Lau; Kirsty Taylor; Kyaw Aung; Anna Spreafico; Aaron R Hansen; Samuel D Saibil; Naoto Hirano; Cynthia Guidos; Trevor J Pugh; Tracy L McGaha; Pamela S Ohashi; Adrian G Sacher; Marcus O Butler; David G Brooks
Journal:  Nat Immunol       Date:  2022-07-14       Impact factor: 31.250

3.  RASA2 ablation in T cells boosts antigen sensitivity and long-term function.

Authors:  Julia Carnevale; Eric Shifrut; Nupura Kale; William A Nyberg; Franziska Blaeschke; Yan Yi Chen; Zhongmei Li; Sagar P Bapat; Morgan E Diolaiti; Patrick O'Leary; Shane Vedova; Julia Belk; Bence Daniel; Theodore L Roth; Stefanie Bachl; Alejandro Allo Anido; Brooke Prinzing; Jorge Ibañez-Vega; Shannon Lange; Dalia Haydar; Marie Luetke-Eversloh; Maelys Born-Bony; Bindu Hegde; Scott Kogan; Tobias Feuchtinger; Hideho Okada; Ansuman T Satpathy; Kevin Shannon; Stephen Gottschalk; Justin Eyquem; Giedre Krenciute; Alan Ashworth; Alexander Marson
Journal:  Nature       Date:  2022-08-24       Impact factor: 69.504

4.  CRISPR Screens to Identify Regulators of Tumor Immunity.

Authors:  Martin W LaFleur; Arlene H Sharpe
Journal:  Annu Rev Cancer Biol       Date:  2021-12-23

Review 5.  Epigenetic regulation of T cell exhaustion.

Authors:  Julia A Belk; Bence Daniel; Ansuman T Satpathy
Journal:  Nat Immunol       Date:  2022-05-27       Impact factor: 31.250

6.  TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors.

Authors:  Wenliang Wang; Aditi Chandra; Naomi Goldman; Sora Yoon; Emily K Ferrari; Son C Nguyen; Eric F Joyce; Golnaz Vahedi
Journal:  Nat Immunol       Date:  2022-06-20       Impact factor: 31.250

7.  The immunometabolite S-2-hydroxyglutarate exacerbates perioperative ischemic brain injury and cognitive dysfunction by enhancing CD8+ T lymphocyte-mediated neurotoxicity.

Authors:  Faqiang Zhang; Mu Niu; Kaikai Guo; Zeguo Feng; Weidong Mi; Long Wang; Yulong Ma; Qiang Fu; Yanhong Liu
Journal:  J Neuroinflammation       Date:  2022-07-07       Impact factor: 9.587

Review 8.  The (re)discovery of tumor-intrinsic determinants of immune sensitivity by functional genetic screens.

Authors:  D W Vredevoogd; G Apriamashvili; D S Peeper
Journal:  Immunooncol Technol       Date:  2021-10-28

Review 9.  Interrogating immune cells and cancer with CRISPR-Cas9.

Authors:  Frank A Buquicchio; Ansuman T Satpathy
Journal:  Trends Immunol       Date:  2021-03-31       Impact factor: 19.709

10.  ZMYND8-regulated IRF8 transcription axis is an acute myeloid leukemia dependency.

Authors:  Zhendong Cao; Krista A Budinich; Hua Huang; Diqiu Ren; Bin Lu; Zhen Zhang; Qingzhou Chen; Yeqiao Zhou; Yu-Han Huang; Fatemeh Alikarami; Molly C Kingsley; Alexandra K Lenard; Aoi Wakabayashi; Eugene Khandros; Will Bailis; Jun Qi; Martin P Carroll; Gerd A Blobel; Robert B Faryabi; Kathrin M Bernt; Shelley L Berger; Junwei Shi
Journal:  Mol Cell       Date:  2021-08-05       Impact factor: 17.970

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