Literature DB >> 33633152

Computer-assisted catalyst development via automated modelling of conformationally complex molecules: application to diphosphinoamine ligands.

Sibo Lin1, Jenna C Fromer2, Yagnaseni Ghosh3, Brian Hanna3, Mohamed Elanany4, Wei Xu5.   

Abstract

Simulation of conformationally complicated molecules requires multiple levels of theory to obtain accurate thermodynamics, requiring significant researcher time to implement. We automate this workflow using all open-source code (XTBDFT) and apply it toward a practical challenge: diphosphinoamine (PNP) ligands used for ethylene tetramerization catalysis may isomerize (with deleterious effects) to iminobisphosphines (PPNs), and a computational method to evaluate PNP ligand candidates would save significant experimental effort. We use XTBDFT to calculate the thermodynamic stability of a wide range of conformationally complex PNP ligands against isomeriation to PPN (ΔGPPN), and establish a strong correlation between ΔGPPN and catalyst performance. Finally, we apply our method to screen novel PNP candidates, saving significant time by ruling out candidates with non-trivial synthetic routes and poor expected catalytic performance.

Entities:  

Year:  2021        PMID: 33633152     DOI: 10.1038/s41598-021-82816-x

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  19 in total

1.  Supramolecular binding thermodynamics by dispersion-corrected density functional theory.

Authors:  Stefan Grimme
Journal:  Chemistry       Date:  2012-07-10       Impact factor: 5.236

2.  PyADF--a scripting framework for multiscale quantum chemistry.

Authors:  Christoph R Jacob; S Maya Beyhan; Rosa E Bulo; André Severo Pereira Gomes; Andreas W Götz; Karin Kiewisch; Jetze Sikkema; Lucas Visscher
Journal:  J Comput Chem       Date:  2011-05-03       Impact factor: 3.376

3.  Use of solution-phase vibrational frequencies in continuum models for the free energy of solvation.

Authors:  Raphael F Ribeiro; Aleksandr V Marenich; Christopher J Cramer; Donald G Truhlar
Journal:  J Phys Chem B       Date:  2011-11-21       Impact factor: 2.991

4.  Exploration of Chemical Compound, Conformer, and Reaction Space with Meta-Dynamics Simulations Based on Tight-Binding Quantum Chemical Calculations.

Authors:  Stefan Grimme
Journal:  J Chem Theory Comput       Date:  2019-04-12       Impact factor: 6.006

5.  GFN2-xTB-An Accurate and Broadly Parametrized Self-Consistent Tight-Binding Quantum Chemical Method with Multipole Electrostatics and Density-Dependent Dispersion Contributions.

Authors:  Christoph Bannwarth; Sebastian Ehlert; Stefan Grimme
Journal:  J Chem Theory Comput       Date:  2019-02-11       Impact factor: 6.006

6.  Automated exploration of the low-energy chemical space with fast quantum chemical methods.

Authors:  Philipp Pracht; Fabian Bohle; Stefan Grimme
Journal:  Phys Chem Chem Phys       Date:  2020-02-19       Impact factor: 3.676

7.  NWChem: Past, present, and future.

Authors:  E Aprà; E J Bylaska; W A de Jong; N Govind; K Kowalski; T P Straatsma; M Valiev; H J J van Dam; Y Alexeev; J Anchell; V Anisimov; F W Aquino; R Atta-Fynn; J Autschbach; N P Bauman; J C Becca; D E Bernholdt; K Bhaskaran-Nair; S Bogatko; P Borowski; J Boschen; J Brabec; A Bruner; E Cauët; Y Chen; G N Chuev; C J Cramer; J Daily; M J O Deegan; T H Dunning; M Dupuis; K G Dyall; G I Fann; S A Fischer; A Fonari; H Früchtl; L Gagliardi; J Garza; N Gawande; S Ghosh; K Glaesemann; A W Götz; J Hammond; V Helms; E D Hermes; K Hirao; S Hirata; M Jacquelin; L Jensen; B G Johnson; H Jónsson; R A Kendall; M Klemm; R Kobayashi; V Konkov; S Krishnamoorthy; M Krishnan; Z Lin; R D Lins; R J Littlefield; A J Logsdail; K Lopata; W Ma; A V Marenich; J Martin Del Campo; D Mejia-Rodriguez; J E Moore; J M Mullin; T Nakajima; D R Nascimento; J A Nichols; P J Nichols; J Nieplocha; A Otero-de-la-Roza; B Palmer; A Panyala; T Pirojsirikul; B Peng; R Peverati; J Pittner; L Pollack; R M Richard; P Sadayappan; G C Schatz; W A Shelton; D W Silverstein; D M A Smith; T A Soares; D Song; M Swart; H L Taylor; G S Thomas; V Tipparaju; D G Truhlar; K Tsemekhman; T Van Voorhis; Á Vázquez-Mayagoitia; P Verma; O Villa; A Vishnu; K D Vogiatzis; D Wang; J H Weare; M J Williamson; T L Windus; K Woliński; A T Wong; Q Wu; C Yang; Q Yu; M Zacharias; Z Zhang; Y Zhao; R J Harrison
Journal:  J Chem Phys       Date:  2020-05-14       Impact factor: 3.488

8.  Ethylene tetramerization: a new route to produce 1-octene in exceptionally high selectivities.

Authors:  Annette Bollmann; Kevin Blann; John T Dixon; Fiona M Hess; Esna Killian; Hulisani Maumela; David S McGuinness; David H Morgan; Arno Neveling; Stefanus Otto; Matthew Overett; Alexandra M Z Slawin; Peter Wasserscheid; Sven Kuhlmann
Journal:  J Am Chem Soc       Date:  2004-11-17       Impact factor: 15.419

Review 9.  Functional Short-Bite Ligands: Synthesis, Coordination Chemistry, and Applications of N-Functionalized Bis(diaryl/dialkylphosphino)amine-type Ligands.

Authors:  Christophe Fliedel; Alessio Ghisolfi; Pierre Braunstein
Journal:  Chem Rev       Date:  2016-07-26       Impact factor: 60.622

10.  QMflows: A Tool Kit for Interoperable Parallel Workflows in Quantum Chemistry.

Authors:  Felipe Zapata; Lars Ridder; Johan Hidding; Christoph R Jacob; Ivan Infante; Lucas Visscher
Journal:  J Chem Inf Model       Date:  2019-07-01       Impact factor: 4.956

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