Literature DB >> 33629140

Tenacibaculum pelagium sp. nov., isolated from marine sediment.

Dan-Dan Shang1, He-Yuan Lun1, Ke-Lei Zhu1, Guan-Jun Chen1,2, Zong-Jun Du3,4.   

Abstract

A novel bright yellow pigmented, Gram-stain-negative, gliding, aerobic and rod-shaped marine bacterium, designated strain S7007T, was isolated from a marine sediment sample taken from Jingzi Wharf, Weihai, China. The bacterium was able to grow at 4-33 °C (optimum 28 °C), at pH 6.5-9.0 (optimum 7.0) and with 2.0-4.0% (w/v) NaCl (optimum 3.0%). According to the phylogenetic analysis based on the 16S rRNA gene sequences, strain S7007T was associated with the genus Tenacibaculum and showed highest similarity to Tenacibaculum adriaticum JCM 14633T (98.0%). The average nucleotide identity (ANI) scores of strain S7007T with T. adriaticum JCM 14633T and T. maritimum NBRC 110778T were 78.3% and 77.1%, respectively and the Genome-to-Genome Distance Calculator (dDDH) scores were 20.5% and 19.9%, respectively. The sole isoprenoid quinone was MK-6 and the major cellular fatty acids (> 10.0%) were iso-C15:0, iso-C15:0 3-OH, iso-C15: 1 G and summed feature 3 (comprising C16:1 ω7c and/or C16:1 ω6c). The major polar lipids of strain S7007T were phosphatidylethanolamine, phosphatidyldimethylethanolamine, one unidentified lipid and two unidentified aminolipids. The genomic DNA G + C content was 30.9 mol %. The combined phenotypic data and phylogenetic inference that strain S7007T should be classified as a novel species in the genus Tenacibaculum, for which the name Tenacibaculum pelagium sp. nov. is proposed. The type strain is S7007T (= MCCC 1H00428T = KCTC 72941T).

Entities:  

Keywords:  16S rRNA gene; Draft genome sequencing; Tenacibaculum pelagium

Mesh:

Substances:

Year:  2021        PMID: 33629140     DOI: 10.1007/s00203-021-02208-7

Source DB:  PubMed          Journal:  Arch Microbiol        ISSN: 0302-8933            Impact factor:   2.552


  26 in total

1.  Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family.

Authors:  Jean-Francois Bernardet; Yasuyoshi Nakagawa; Barry Holmes
Journal:  Int J Syst Evol Microbiol       Date:  2002-05       Impact factor: 2.747

2.  DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.

Authors:  Johan Goris; Konstantinos T Konstantinidis; Joel A Klappenbach; Tom Coenye; Peter Vandamme; James M Tiedje
Journal:  Int J Syst Evol Microbiol       Date:  2007-01       Impact factor: 2.747

3.  Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation.

Authors:  Samuel V Angiuoli; Aaron Gussman; William Klimke; Guy Cochrane; Dawn Field; George Garrity; Chinnappa D Kodira; Nikos Kyrpides; Ramana Madupu; Victor Markowitz; Tatiana Tatusova; Nick Thomson; Owen White
Journal:  OMICS       Date:  2008-06

4.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

5.  Tenacibaculum adriaticum sp. nov., from a bryozoan in the Adriatic Sea.

Authors:  Herwig Heindl; Jutta Wiese; Johannes F Imhoff
Journal:  Int J Syst Evol Microbiol       Date:  2008-03       Impact factor: 2.747

6.  Flexibacter ovolyticus sp. nov., a pathogen of eggs and larvae of Atlantic halibut, Hippoglossus hippoglossus L.

Authors:  G H Hansen; O Bergh; J Michaelsen; D Knappskog
Journal:  Int J Syst Bacteriol       Date:  1992-07

7.  Seonamhaeicola marinus sp. nov., isolated from marine algae.

Authors:  Dong-Bo Fang; Ji-Ru Han; Yan Liu; Zong-Jun Du
Journal:  Int J Syst Evol Microbiol       Date:  2017-10-06       Impact factor: 2.747

8.  Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison.

Authors:  Alexander F Auch; Mathias von Jan; Hans-Peter Klenk; Markus Göker
Journal:  Stand Genomic Sci       Date:  2010-01-28

9.  antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.

Authors:  Kai Blin; Simon Shaw; Katharina Steinke; Rasmus Villebro; Nadine Ziemert; Sang Yup Lee; Marnix H Medema; Tilmann Weber
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

10.  Draconibacterium orientale gen. nov., sp. nov., isolated from two distinct marine environments, and proposal of Draconibacteriaceae fam. nov.

Authors:  Zong-Jun Du; Ying Wang; Christopher Dunlap; Alejandro P Rooney; Guan-Jun Chen
Journal:  Int J Syst Evol Microbiol       Date:  2014-02-12       Impact factor: 2.747

View more
  1 in total

1.  Gelidibacter maritimus sp. nov., isolated from marine sediment.

Authors:  Cheng Gao; He-Yuan Lun; Dan-Dan Shang; Min Cai; Meng-Qi Ye; Zong-Jun Du
Journal:  Arch Microbiol       Date:  2021-07-26       Impact factor: 2.552

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.