Literature DB >> 33626103

Effect size, sample size and power of forced swim test assays in mice: Guidelines for investigators to optimize reproducibility.

Neil R Smalheiser1, Elena E Graetz2, Zhou Yu2, Jing Wang2.   

Abstract

A recent flood of publications has documented serious problems in scientific reproducibility, power, and reporting of biomedical articles, yet scientists persist in their usual practices. Why? We examined a popular and important preclinical assay, the Forced Swim Test (FST) in mice used to test putative antidepressants. Whether the mice were assayed in a naïve state vs. in a model of depression or stress, and whether the mice were given test agents vs. known antidepressants regarded as positive controls, the mean effect sizes seen in the experiments were indeed extremely large (1.5-2.5 in Cohen's d units); most of the experiments utilized 7-10 animals per group which did have adequate power to reliably detect effects of this magnitude. We propose that this may at least partially explain why investigators using the FST do not perceive intuitively that their experimental designs fall short-even though proper prospective design would require ~21-26 animals per group to detect, at a minimum, large effects (0.8 in Cohen's d units) when the true effect of a test agent is unknown. Our data provide explicit parameters and guidance for investigators seeking to carry out prospective power estimation for the FST. More generally, altering the real-life behavior of scientists in planning their experiments may require developing educational tools that allow them to actively visualize the inter-relationships among effect size, sample size, statistical power, and replicability in a direct and intuitive manner.

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Year:  2021        PMID: 33626103      PMCID: PMC7904226          DOI: 10.1371/journal.pone.0243668

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  42 in total

1.  Getting personal with the "reproducibility crisis": interviews in the animal research community.

Authors:  Ben G Fitzpatrick; Elena Koustova; Yun Wang
Journal:  Lab Anim (NY)       Date:  2018-07       Impact factor: 12.625

Review 2.  Revisiting the validity of the mouse forced swim test: Systematic review and meta-analysis of the effects of prototypic antidepressants.

Authors:  N Z Kara; Y Stukalin; H Einat
Journal:  Neurosci Biobehav Rev       Date:  2017-11-09       Impact factor: 8.989

3.  Robust research needs many lines of evidence.

Authors:  Marcus R Munafò; George Davey Smith
Journal:  Nature       Date:  2018-01-25       Impact factor: 49.962

4.  Repeated rat-forced swim test: reducing the number of animals to evaluate gradual effects of antidepressants.

Authors:  T J Mezadri; G M Batista; A C Portes; J Marino-Neto; C Lino-de-Oliveira
Journal:  J Neurosci Methods       Date:  2010-12-16       Impact factor: 2.390

5.  Replication Validity of Initial Association Studies: A Comparison between Psychiatry, Neurology and Four Somatic Diseases.

Authors:  Estelle Dumas-Mallet; Katherine Button; Thomas Boraud; Marcus Munafo; François Gonon
Journal:  PLoS One       Date:  2016-06-23       Impact factor: 3.240

6.  Power-up: A Reanalysis of 'Power Failure' in Neuroscience Using Mixture Modeling.

Authors:  Camilla L Nord; Vincent Valton; John Wood; Jonathan P Roiser
Journal:  J Neurosci       Date:  2017-07-13       Impact factor: 6.167

7.  Increasing efficiency of preclinical research by group sequential designs.

Authors:  Konrad Neumann; Ulrike Grittner; Sophie K Piper; Andre Rex; Oscar Florez-Vargas; George Karystianis; Alice Schneider; Ian Wellwood; Bob Siegerink; John P A Ioannidis; Jonathan Kimmelman; Ulrich Dirnagl
Journal:  PLoS Biol       Date:  2017-03-10       Impact factor: 8.029

8.  PSYCHOLOGY. Estimating the reproducibility of psychological science.

Authors: 
Journal:  Science       Date:  2015-08-28       Impact factor: 47.728

Review 9.  Calculating and reporting effect sizes to facilitate cumulative science: a practical primer for t-tests and ANOVAs.

Authors:  Daniël Lakens
Journal:  Front Psychol       Date:  2013-11-26

10.  What exactly is 'N' in cell culture and animal experiments?

Authors:  Stanley E Lazic; Charlie J Clarke-Williams; Marcus R Munafò
Journal:  PLoS Biol       Date:  2018-04-04       Impact factor: 8.029

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  3 in total

1.  Faecal microbiota transplantation from patients with depression or healthy individuals into rats modulates mood-related behaviour.

Authors:  Julie Kristine Knudsen; Thomas Yssing Michaelsen; Caspar Bundgaard-Nielsen; René Ernst Nielsen; Simon Hjerrild; Peter Leutscher; Gregers Wegener; Suzette Sørensen
Journal:  Sci Rep       Date:  2021-11-08       Impact factor: 4.379

2.  DBscorer: An Open-Source Software for Automated Accurate Analysis of Rodent Behavior in Forced Swim Test and Tail Suspension Test.

Authors:  Arnab Nandi; Garima Virmani; Aatmika Barve; Swananda Marathe
Journal:  eNeuro       Date:  2021-11-04

Review 3.  A systematic review of studies investigating the acute effects of N-methyl-D-aspartate receptor antagonists on behavioural despair in normal animals suggests poor predictive validity.

Authors:  Martin Viktorov; Matthew P Wilkinson; Victoria C E Elston; Medi Stone; Emma S J Robinson
Journal:  Brain Neurosci Adv       Date:  2022-03-12
  3 in total

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