Literature DB >> 33619384

The NCI Genomic Data Commons.

Allison P Heath1, Vincent Ferretti2,3, Stuti Agrawal4,5, Maksim An4,6, James C Angelakos4, Renuka Arya4, Rosita Bajari2, Bilal Baqar4, Justin H B Barnowski4,7, Jeffrey Burt2, Ann Catton2, Brandon F Chan2, Fay Chu8, Kim Cullion2, Tanja Davidsen9, Phuong-My Do2, Christian Dompierre4,10, Martin L Ferguson9, Michael S Fitzsimons4,11, Michael Ford4,12, Miyuki Fukuma2, Sharon Gaheen13, Gajanan L Ganji4, Tzintzuni I Garcia14, Sameera S George4,15, Daniela S Gerhard9, Francois Gerthoffert2,16, Fauzi Gomez4, Kang Han4, Kyle M Hernandez14, Biju Issac13, Richard Jackson4,7, Mark A Jensen13, Sid Joshi2, Ajinkya Kadam4,17, Aishmit Khurana2, Kyle M J Kim2, Victoria E Kraft4, Shenglai Li4, Tara M Lichtenberg18, Janice Lodato4,19, Laxmi Lolla8, Plamen Martinov20,21, Jeffrey A Mazzone4, Daniel P Miller4,1, Ian Miller4, Joshua S Miller4, Koji Miyauchi2, Mark W Murphy4,22, Thomas Nullet4, Rowland O Ogwara4, Francisco M Ortuño4,23, Jesús Pedrosa4,24, Phuong L Pham4,25, Maxim Y Popov4,26, James J Porter4, Raymond Powell4,27, Karl Rademacher4, Colin P Reid4, Samantha Rich2, Bessie Rogel2, Himanso Sahni13, Jeremiah H Savage4, Kyle A Schmitt4,27, Trevar J Simmons4, Joseph Sislow4,28, Jonathan Spring4, Lincoln Stein2, Sean Sullivan4, Yajing Tang4,29, Mathangi Thiagarajan13, Heather D Troyer4,30, Chang Wang2,31, Zhining Wang9, Bedford L West4,15, Alex Wilmer2, Shane Wilson2,32, Kaman Wu2, William P Wysocki4, Linda Xiang2, Joseph T Yamada2, Liming Yang9, Christine Yu2, Christina K Yung2, Jean Claude Zenklusen9, Junjun Zhang2, Zhenyu Zhang4, Yuanheng Zhao2, Ariz Zubair4, Louis M Staudt9, Robert L Grossman33.   

Abstract

Mesh：

Year:  2021        PMID： 33619384     DOI： 10.1038/s41588-021-00791-5

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


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  11 in total

Review 1.  Artificial Intelligence for Radiation Oncology Applications Using Public Datasets.

Authors:  Kareem A Wahid; Enrico Glerean; Jaakko Sahlsten; Joel Jaskari; Kimmo Kaski; Mohamed A Naser; Renjie He; Abdallah S R Mohamed; Clifton D Fuller
Journal:  Semin Radiat Oncol       Date:  2022-10       Impact factor: 5.421

2.  cSurvival: a web resource for biomarker interactions in cancer outcomes and in cell lines.

Authors:  Xuanjin Cheng; Yongxing Liu; Jiahe Wang; Yujie Chen; Andrew Gordon Robertson; Xuekui Zhang; Steven J M Jones; Stefan Taubert
Journal:  Brief Bioinform       Date:  2022-05-13       Impact factor: 13.994

3.  Analysis of core genes for colorectal cancer prognosis based on immune and stromal scores.

Authors:  Yi Zhu; Yuan Zhou; HongGang Jiang; ZhiHeng Chen; BoHao Lu
Journal:  PeerJ       Date:  2021-11-19       Impact factor: 2.984

Review 4.  Machine learning applications for therapeutic tasks with genomics data.

Authors:  Kexin Huang; Cao Xiao; Lucas M Glass; Cathy W Critchlow; Greg Gibson; Jimeng Sun
Journal:  Patterns (N Y)       Date:  2021-08-09

5.  The Biomedical Research Hub: a federated platform for patient research data.

Authors:  Craig Barnes; Binam Bajracharya; Matthew Cannalte; Zakir Gowani; Will Haley; Taha Kass-Hout; Kyle Hernandez; Michael Ingram; Hara Prasad Juvvala; Gina Kuffel; Plamen Martinov; J Montgomery Maxwell; John McCann; Ankit Malhotra; Noah Metoki-Shlubsky; Chris Meyer; Andre Paredes; Jawad Qureshi; Xenia Ritter; Philip Schumm; Mingfei Shao; Urvi Sheth; Trevar Simmons; Alexander VanTol; Zhenyu Zhang; Robert L Grossman
Journal:  J Am Med Inform Assoc       Date:  2022-03-15       Impact factor: 4.497

6.  FAIR Genomes metadata schema promoting Next Generation Sequencing data reuse in Dutch healthcare and research.

Authors:  Jeroen A M Beliën; Mariëlle E van Gijn; Morris A Swertz; K Joeri van der Velde; Gurnoor Singh; Rajaram Kaliyaperumal; XiaoFeng Liao; Sander de Ridder; Susanne Rebers; Hindrik H D Kerstens; Fernanda de Andrade; Jeroen van Reeuwijk; Fini E De Gruyter; Saskia Hiltemann; Maarten Ligtvoet; Marjan M Weiss; Hanneke W M van Deutekom; Anne M L Jansen; Andrew P Stubbs; Lisenka E L M Vissers; Jeroen F J Laros; Esther van Enckevort; Daphne Stemkens; Peter A C 't Hoen
Journal:  Sci Data       Date:  2022-04-13       Impact factor: 8.501

7.  A comprehensive multi-omics analysis reveals molecular features associated with cancer via RNA cross-talks in the Notch signaling pathway.

Authors:  Li Guo; Sunjing Li; Xiaoqiang Yan; Lulu Shen; Daoliang Xia; Yiqi Xiong; Yuyang Dou; Lan Mi; Yujie Ren; Yangyang Xiang; Dekang Ren; Jun Wang; Tingming Liang
Journal:  Comput Struct Biotechnol J       Date:  2022-07-26       Impact factor: 6.155

8.  Chromatin accessibility landscape and active transcription factors in primary human invasive lobular and ductal breast carcinomas.

Authors:  Sanghoon Lee; Hatice Ulku Osmanbeyoglu
Journal:  Breast Cancer Res       Date:  2022-07-29       Impact factor: 8.408

9.  From biomedical cloud platforms to microservices: next steps in FAIR data and analysis.

Authors:  Nathan C Sheffield; Vivien R Bonazzi; Philip E Bourne; Tony Burdett; Timothy Clark; Robert L Grossman; Ola Spjuth; Andrew D Yates
Journal:  Sci Data       Date:  2022-09-08       Impact factor: 8.501

10.  LncGSEA: a versatile tool to infer lncRNA associated pathways from large-scale cancer transcriptome sequencing data.

Authors:  Yanan Ren; Ting-You Wang; Leah C Anderton; Qi Cao; Rendong Yang
Journal:  BMC Genomics       Date:  2021-07-27       Impact factor: 3.969
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