Literature DB >> 33619271

RING domains act as both substrate and enzyme in a catalytic arrangement to drive self-anchored ubiquitination.

Leo Kiss1, Dean Clift2, Nadine Renner2, David Neuhaus2, Leo C James3.   

Abstract

Attachment of ubiquitin (Ub) to proteins is one of the most abundant and versatile of all posttranslational modifications and affects outcomes in essentially all physiological processes. RING E3 ligases target E2 Ub-conjugating enzymes to the substrate, resulting in its ubiquitination. However, the mechanism by which a ubiquitin chain is formed on the substrate remains elusive. Here we demonstrate how substrate binding can induce a specific RING topology that enables self-ubiquitination. By analyzing a catalytically trapped structure showing the initiation of TRIM21 RING-anchored ubiquitin chain elongation, and in combination with a kinetic study, we illuminate the chemical mechanism of ubiquitin conjugation. Moreover, biochemical and cellular experiments show that the topology found in the structure can be induced by substrate binding. Our results provide insights into ubiquitin chain formation on a structural, biochemical and cellular level with broad implications for targeted protein degradation.

Entities:  

Mesh:

Substances:

Year:  2021        PMID: 33619271      PMCID: PMC7900206          DOI: 10.1038/s41467-021-21443-6

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  65 in total

1.  Subunit stoichiometry of a mammalian K+ channel determined by construction of multimeric cDNAs.

Authors:  E R Liman; J Tytgat; P Hess
Journal:  Neuron       Date:  1992-11       Impact factor: 17.173

2.  Regulation of virus neutralization and the persistent fraction by TRIM21.

Authors:  W A McEwan; F Hauler; C R Williams; S R Bidgood; D L Mallery; R A Crowther; L C James
Journal:  J Virol       Date:  2012-05-30       Impact factor: 5.103

3.  Hexagonal assembly of a restricting TRIM5alpha protein.

Authors:  Barbie K Ganser-Pornillos; Viswanathan Chandrasekaran; Owen Pornillos; Joseph G Sodroski; Wesley I Sundquist; Mark Yeager
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-27       Impact factor: 11.205

4.  Mms2-Ubc13 covalently bound to ubiquitin reveals the structural basis of linkage-specific polyubiquitin chain formation.

Authors:  Michael J Eddins; Candice M Carlile; Kamila M Gomez; Cecile M Pickart; Cynthia Wolberger
Journal:  Nat Struct Mol Biol       Date:  2006-09-17       Impact factor: 15.369

5.  E2-BRCA1 RING interactions dictate synthesis of mono- or specific polyubiquitin chain linkages.

Authors:  Devin E Christensen; Peter S Brzovic; Rachel E Klevit
Journal:  Nat Struct Mol Biol       Date:  2007-09-16       Impact factor: 15.369

6.  BIRC7-E2 ubiquitin conjugate structure reveals the mechanism of ubiquitin transfer by a RING dimer.

Authors:  Hao Dou; Lori Buetow; Gary J Sibbet; Kenneth Cameron; Danny T Huang
Journal:  Nat Struct Mol Biol       Date:  2012-08-14       Impact factor: 15.369

7.  Atomic Structures of Minor Proteins VI and VII in Human Adenovirus.

Authors:  Xinghong Dai; Lily Wu; Ren Sun; Z Hong Zhou
Journal:  J Virol       Date:  2017-11-30       Impact factor: 5.103

8.  Structural basis for PRYSPRY-mediated tripartite motif (TRIM) protein function.

Authors:  Leo C James; Anthony H Keeble; Zahra Khan; David A Rhodes; John Trowsdale
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-30       Impact factor: 11.205

9.  Dynamic caveolae exclude bulk membrane proteins and are required for sorting of excess glycosphingolipids.

Authors:  Elena Shvets; Vassilis Bitsikas; Gillian Howard; Carsten Gram Hansen; Benjamin J Nichols
Journal:  Nat Commun       Date:  2015-04-21       Impact factor: 14.919

10.  Assembly, analysis and architecture of atypical ubiquitin chains.

Authors:  Manuela K Hospenthal; Stefan M V Freund; David Komander
Journal:  Nat Struct Mol Biol       Date:  2013-04-07       Impact factor: 15.369

View more
  7 in total

Review 1.  LISTERIN E3 Ubiquitin Ligase and Ribosome-Associated Quality Control (RQC) Mechanism.

Authors:  Ribhav Mishra; Anurag Bansal; Amit Mishra
Journal:  Mol Neurobiol       Date:  2021-09-29       Impact factor: 5.590

2.  Role of Nse1 Subunit of SMC5/6 Complex as a Ubiquitin Ligase.

Authors:  Peter Kolesar; Karel Stejskal; David Potesil; Johanne M Murray; Jan J Palecek
Journal:  Cells       Date:  2022-01-04       Impact factor: 6.600

Review 3.  TRIM21/Ro52 - Roles in Innate Immunity and Autoimmune Disease.

Authors:  Esther L Jones; Stephen M Laidlaw; Lynn B Dustin
Journal:  Front Immunol       Date:  2021-09-06       Impact factor: 7.561

4.  Ubiquitin and a charged loop regulate the ubiquitin E3 ligase activity of Ark2C.

Authors:  Andrej Paluda; Adam J Middleton; Claudia Rossig; Peter D Mace; Catherine L Day
Journal:  Nat Commun       Date:  2022-03-04       Impact factor: 14.919

5.  The FUSION protein crystallization screen.

Authors:  Fabrice Gorrec; Dom Bellini
Journal:  J Appl Crystallogr       Date:  2022-03-11       Impact factor: 3.304

6.  Structure of UBE2K-Ub/E3/polyUb reveals mechanisms of K48-linked Ub chain extension.

Authors:  Mark A Nakasone; Karolina A Majorek; Mads Gabrielsen; Gary J Sibbet; Brian O Smith; Danny T Huang
Journal:  Nat Chem Biol       Date:  2022-01-13       Impact factor: 16.174

7.  A functional assay for serum detection of antibodies against SARS-CoV-2 nucleoprotein.

Authors:  Anna Albecka; Dean Clift; Marina Vaysburd; Tyler Rhinesmith; Sarah L Caddy; David M Favara; Helen E Baxendale; Leo C James
Journal:  EMBO J       Date:  2021-07-29       Impact factor: 14.012

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.