Literature DB >> 33615237

BoXHED: Boosted eXact Hazard Estimator with Dynamic covariates.

Xiaochen Wang1, Arash Pakbin2, Bobak J Mortazavi2, Hongyu Zhao1, Donald K K Lee3.   

Abstract

The proliferation of medical monitoring devices makes it possible to track health vitals at high frequency, enabling the development of dynamic health risk scores that change with the underlying readings. Survival analysis, in particular hazard estimation, is well-suited to analyzing this stream of data to predict disease onset as a function of the time-varying vitals. This paper introduces the software package BoXHED (pronounced 'box-head') for nonparametrically estimating hazard functions via gradient boosting. BoXHED 1.0 is a novel tree-based implementation of the generic estimator proposed in Lee et al. (2017), which was designed for handling time-dependent covariates in a fully nonparametric manner. BoXHED is also the first publicly available software implementation for Lee et al. (2017). Applying it to a cardiovascular disease dataset from the Framingham Heart Study reveals novel interaction effects among known risk factors, potentially resolving an open question in clinical literature.

Entities:  

Year:  2020        PMID: 33615237      PMCID: PMC7890797     

Source DB:  PubMed          Journal:  Proc Mach Learn Res


  11 in total

1.  Boosting proportional hazards models using smoothing splines, with applications to high-dimensional microarray data.

Authors:  Hongzhe Li; Yihui Luan
Journal:  Bioinformatics       Date:  2005-02-15       Impact factor: 6.937

2.  Epidemiological approaches to heart disease: the Framingham Study.

Authors:  T R DAWBER; G F MEADORS; F E MOORE
Journal:  Am J Public Health Nations Health       Date:  1951-03

3.  Development of Imminent Mortality Predictor for Advanced Cancer (IMPAC), a Tool to Predict Short-Term Mortality in Hospitalized Patients With Advanced Cancer.

Authors:  Kerin Adelson; Donald K K Lee; Salimah Velji; Junchao Ma; Susan K Lipka; Joan Rimar; Peter Longley; Teresita Vega; Javier Perez-Irizarry; Edieal Pinker; Rogerio Lilenbaum
Journal:  J Oncol Pract       Date:  2017-12-05       Impact factor: 3.840

4.  The c-index is not proper for the evaluation of $t$-year predicted risks.

Authors:  Paul Blanche; Michael W Kattan; Thomas A Gerds
Journal:  Biostatistics       Date:  2019-04-01       Impact factor: 5.899

5.  BOOSTED NONPARAMETRIC HAZARDS WITH TIME-DEPENDENT COVARIATES.

Authors:  Donald K K Lee; Ningyuan Chen; Hemant Ishwaran
Journal:  Ann Stat       Date:  2021-09-29       Impact factor: 4.028

6.  Framingham risk score and prediction of lifetime risk for coronary heart disease.

Authors:  Donald M Lloyd-Jones; Peter W F Wilson; Martin G Larson; Alexa Beiser; Eric P Leip; Ralph B D'Agostino; Daniel Levy
Journal:  Am J Cardiol       Date:  2004-07-01       Impact factor: 2.778

7.  2019 ACC/AHA Guideline on the Primary Prevention of Cardiovascular Disease: A Report of the American College of Cardiology/American Heart Association Task Force on Clinical Practice Guidelines.

Authors:  Donna K Arnett; Roger S Blumenthal; Michelle A Albert; Andrew B Buroker; Zachary D Goldberger; Ellen J Hahn; Cheryl Dennison Himmelfarb; Amit Khera; Donald Lloyd-Jones; J William McEvoy; Erin D Michos; Michael D Miedema; Daniel Muñoz; Sidney C Smith; Salim S Virani; Kim A Williams; Joseph Yeboah; Boback Ziaeian
Journal:  J Am Coll Cardiol       Date:  2019-03-17       Impact factor: 24.094

8.  Evidence for Reverse Causality in the Association Between Blood Pressure and Cardiovascular Risk in Patients With Chronic Kidney Disease.

Authors:  William Herrington; Natalie Staplin; Parminder K Judge; Marion Mafham; Jonathan Emberson; Richard Haynes; David C Wheeler; Robert Walker; Charlie Tomson; Larry Agodoa; Andrzej Wiecek; Sarah Lewington; Christina A Reith; Martin J Landray; Colin Baigent
Journal:  Hypertension       Date:  2016-12-27       Impact factor: 10.190

9.  Using the Shapes of Clinical Data Trajectories to Predict Mortality in ICUs.

Authors:  Junchao Ma; Donald K K Lee; Michael E Perkins; Margaret A Pisani; Edieal Pinker
Journal:  Crit Care Explor       Date:  2019-04-17

10.  Allowing for mandatory covariates in boosting estimation of sparse high-dimensional survival models.

Authors:  Harald Binder; Martin Schumacher
Journal:  BMC Bioinformatics       Date:  2008-01-10       Impact factor: 3.169

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