| Literature DB >> 33605721 |
Rahul Kumar Jinger1, Heike Fliegl2, Radovan Bast3, Maria Dimitrova4, Susi Lehtola4,5, Dage Sundholm4.
Abstract
We develop a methodology for calculating, analyzing, and visualizing nuclear magnetic shielding densities which are calculated from the current density via the Biot-Savart relation. Atomic contributions to nuclear magnetic shielding constants can be estimated within our framework with a Becke partitioning scheme. The new features have been implemented in the GIMIC program and are applied in this work to the study of the 1H and 13C nuclear magnetic shieldings in benzene (C6H6) and cyclobutadiene (C4H4). The new methodology allows a visual inspection of the spatial origins of the positive (shielding) and negative (deshielding) contributions to the nuclear magnetic shielding constant of a single nucleus, something which has not been hitherto easily accomplished. Analysis of the shielding densities shows that diatropic and paratropic current-density fluxes yield both shielding and deshielding contributions, as the shielding or deshielding is determined by the direction of the current-density flux with respect to the studied nucleus instead of the tropicity. Becke partitioning of the magnetic shieldings shows that the magnetic shielding contributions mainly originate from the studied atom and its nearest neighbors, confirming the localized character of nuclear magnetic shieldings.Entities:
Year: 2021 PMID: 33605721 PMCID: PMC8023705 DOI: 10.1021/acs.jpca.0c10884
Source DB: PubMed Journal: J Phys Chem A ISSN: 1089-5639 Impact factor: 2.781
Figure 1zz component of the magnetic shielding density of the (a) 1H NMR shielding and (b) 13C NMR shielding in the molecular plane of C6H6. The shielding contributions are shown in blue and the deshielding contributions in red in the range [−0.2; 0.2].
Figure 2zz component of the magnetic shielding density of the (a) 1H NMR shielding and (b) 13C NMR shielding of C6H6 calculated 1 a0 above the molecular plane. The shielding contributions are shown in blue and the deshielding contributions in red in the range [−0.2; 0.2].
Figure 3Absolute value of the magnetic shielding density of the 1H NMR shielding (blue) and 13C NMR shielding (yellow) in C6H6 represented as contours with isovalue 4.8. The ipso atoms have the largest contributions.
Atomic Contributions to the 1H NMR Shielding of C6H6 Calculated at the B3LYP/def2-TZVP Level of Theory
| domain | total | positive | negative | percentage |
|---|---|---|---|---|
| 1.48 | 5.24 | –3.76 | 6.11% | |
| 0.64 | 1.43 | –0.79 | 2.64% | |
| 0.52 | 0.77 | –0.25 | 2.16% | |
| 0.42 | 0.63 | –0.21 | 1.74% | |
| 18.97 | 20.33 | –1.36 | 78.13% | |
| 0.29 | 0.36 | –0.07 | 1.19% | |
| 0.17 | 0.17 | –0.00 | 0.71% | |
| 0.15 | 0.15 | –0.00 | 0.61% | |
| total | 24.28 | 31.83 | –7.54 | 100.00% |
Ipso C is the carbon connected to the studied hydrogen nucleus.
Ipso H is the studied hydrogen nucleus.
Atomic Contributions to the 13C NMR Shielding of C6H6 Calculated at the B3LYP/def2-TZVP Level of Theory
| domain | total | positive | negative | percentage |
|---|---|---|---|---|
| 35.17 | 107.15 | –71.97 | 70.49% | |
| 3.49 | 4.96 | –1.47 | 7.00% | |
| 1.04 | 1.56 | –0.52 | 2.08% | |
| 0.74 | 1.19 | –0.45 | 1.48% | |
| 2.80 | 2.81 | –0.01 | 5.61% | |
| 0.65 | 0.66 | –0.01 | 1.30% | |
| 0.30 | 0.30 | –0.00 | 0.59% | |
| 0.24 | 0.24 | –0.00 | 0.49% | |
| total | 49.90 | 126.35 | –76.44 | 100.00% |
Ipso C is the studied carbon nucleus.
Ipso H is the hydrogen connected to the studied carbon nucleus.
Figure 4zz component of the magnetic shielding density of the (a) 1H NMR shielding and (b) 13C NMR shielding in the molecular plane of C4H4. The shielding contribution is shown in blue and the deshielding contribution in red in the range [−0.2; 0.2].
Figure 5zz component of the magnetic shielding density of the (a) 1H NMR shielding and (b) 13C NMR shielding of C4H4 calculated 1 a0 above the molecular plane. The shielding contribution is shown in blue and the deshielding contribution in red in the range [−0.2; 0.2] in (b).
Figure 6Absolute value of the magnetic shielding density of the 1H NMR shielding (blue) and 13C NMR shielding (yellow) in C4H4 represented as contours with isovalue 7. The ipso atoms have the largest contributions.
Atomic Contributions to the 1H NMR Shielding of C4H4 Calculated at the B3LYP/def2-TZVP Level of Theory
| domain | total | positive | negative | percentage |
|---|---|---|---|---|
| 6.48 | 8.52 | –2.05 | 24.98% | |
| –0.15 | 0.81 | –0.97 | –0.59% | |
| 0.95 | 1.83 | –0.88 | 3.66% | |
| –0.44 | 0.42 | –0.87 | –1.71% | |
| 18.41 | 19.47 | –1.06 | 70.98% | |
| 0.22 | 0.24 | –0.03 | 0.83% | |
| 0.30 | 0.32 | –0.02 | 1.17% | |
| 0.18 | 0.18 | –0.00 | 0.70% | |
| total | 25.93 | 31.80 | –5.86 | 100.00% |
Ipso is the studied atom or its nearest neighbor.
Moiety with a single bond to the ipso carbon.
Moiety with a double bond to the ipso carbon.
Atomic Contributions to the 13C NMR Shielding of C4H4 Calculated at the B3LYP/def2-TZVP Level of Theory
| domain | total | positive | negative | percentage |
|---|---|---|---|---|
| 32.51 | 106.93 | –74.41 | 87.50% | |
| –0.73 | 1.74 | –2.47 | –1.96% | |
| 2.66 | 5.38 | –2.71 | 7.17% | |
| –1.16 | 0.92 | –2.09 | –3.13% | |
| 2.49 | 2.51 | –0.03 | 6.69% | |
| 0.45 | 0.46 | –0.01 | 1.22% | |
| 0.61 | 0.61 | –0.00 | 1.64% | |
| 0.32 | 0.33 | –0.00 | 0.87% | |
| total | 37.16 | 118.90 | –81.74 | 100.00% |
Ipso is the studied atom or its nearest neighbor.
Moiety with a single bond to the ipso carbon.
Moiety with a double bond to the ipso carbon.