Literature DB >> 32414256

TURBOMOLE: Modular program suite for ab initio quantum-chemical and condensed-matter simulations.

Sree Ganesh Balasubramani1, Guo P Chen1, Sonia Coriani2, Michael Diedenhofen3, Marius S Frank4, Yannick J Franzke5, Filipp Furche1, Robin Grotjahn6, Michael E Harding7, Christof Hättig4, Arnim Hellweg3, Benjamin Helmich-Paris8, Christof Holzer5, Uwe Huniar3, Martin Kaupp6, Alireza Marefat Khah4, Sarah Karbalaei Khani4, Thomas Müller9, Fabian Mack5, Brian D Nguyen1, Shane M Parker10, Eva Perlt1, Dmitrij Rappoport11, Kevin Reiter12, Saswata Roy1, Matthias Rückert4, Gunnar Schmitz13, Marek Sierka7, Enrico Tapavicza14, David P Tew15, Christoph van Wüllen16, Vamsee K Voora17, Florian Weigend12, Artur Wodyński6, Jason M Yu1.   

Abstract

TURBOMOLE is a collaborative, multi-national software development project aiming to provide highly efficient and stable computational tools for quantum chemical simulations of molecules, clusters, periodic systems, and solutions. The TURBOMOLE software suite is optimized for widely available, inexpensive, and resource-efficient hardware such as multi-core workstations and small computer clusters. TURBOMOLE specializes in electronic structure methods with outstanding accuracy-cost ratio, such as density functional theory including local hybrids and the random phase approximation (RPA), GW-Bethe-Salpeter methods, second-order Møller-Plesset theory, and explicitly correlated coupled-cluster methods. TURBOMOLE is based on Gaussian basis sets and has been pivotal for the development of many fast and low-scaling algorithms in the past three decades, such as integral-direct methods, fast multipole methods, the resolution-of-the-identity approximation, imaginary frequency integration, Laplace transform, and pair natural orbital methods. This review focuses on recent additions to TURBOMOLE's functionality, including excited-state methods, RPA and Green's function methods, relativistic approaches, high-order molecular properties, solvation effects, and periodic systems. A variety of illustrative applications along with accuracy and timing data are discussed. Moreover, available interfaces to users as well as other software are summarized. TURBOMOLE's current licensing, distribution, and support model are discussed, and an overview of TURBOMOLE's development workflow is provided. Challenges such as communication and outreach, software infrastructure, and funding are highlighted.

Entities:  

Year:  2020        PMID: 32414256      PMCID: PMC7228783          DOI: 10.1063/5.0004635

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  262 in total

1.  Intrinsic lifetimes of the excited state of DNA and RNA bases.

Authors:  Hyuk Kang; Kang Taek Lee; Boyong Jung; Yeon Jae Ko; Seong Keun Kim
Journal:  J Am Chem Soc       Date:  2002-11-06       Impact factor: 15.419

2.  Calculation of two-photon absorption strengths with the approximate coupled cluster singles and doubles model CC2 using the resolution-of-identity approximation.

Authors:  Daniel H Friese; Christof Hättig; Kenneth Ruud
Journal:  Phys Chem Chem Phys       Date:  2011-11-30       Impact factor: 3.676

3.  One-Electron Energies from the Two-Component GW Method.

Authors:  Michael Kühn; Florian Weigend
Journal:  J Chem Theory Comput       Date:  2015-03-10       Impact factor: 6.006

4.  Analytical First-Order Molecular Properties and Forces within the Adiabatic Connection Random Phase Approximation.

Authors:  Asbjörn M Burow; Jefferson E Bates; Filipp Furche; Henk Eshuis
Journal:  J Chem Theory Comput       Date:  2013-12-16       Impact factor: 6.006

5.  GROMACS: fast, flexible, and free.

Authors:  David Van Der Spoel; Erik Lindahl; Berk Hess; Gerrit Groenhof; Alan E Mark; Herman J C Berendsen
Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

6.  Error-consistent segmented contracted all-electron relativistic basis sets of double- and triple-zeta quality for NMR shielding constants.

Authors:  Yannick J Franzke; Robert Treß; Tobias M Pazdera; Florian Weigend
Journal:  Phys Chem Chem Phys       Date:  2019-07-18       Impact factor: 3.676

7.  The atomic simulation environment-a Python library for working with atoms.

Authors:  Ask Hjorth Larsen; Jens Jørgen Mortensen; Jakob Blomqvist; Ivano E Castelli; Rune Christensen; Marcin Dułak; Jesper Friis; Michael N Groves; Bjørk Hammer; Cory Hargus; Eric D Hermes; Paul C Jennings; Peter Bjerre Jensen; James Kermode; John R Kitchin; Esben Leonhard Kolsbjerg; Joseph Kubal; Kristen Kaasbjerg; Steen Lysgaard; Jón Bergmann Maronsson; Tristan Maxson; Thomas Olsen; Lars Pastewka; Andrew Peterson; Carsten Rostgaard; Jakob Schiøtz; Ole Schütt; Mikkel Strange; Kristian S Thygesen; Tejs Vegge; Lasse Vilhelmsen; Michael Walter; Zhenhua Zeng; Karsten W Jacobsen
Journal:  J Phys Condens Matter       Date:  2017-03-21       Impact factor: 2.333

8.  Calculation of Magnetic Shielding Constants with meta-GGA Functionals Employing the Multipole-Accelerated Resolution of the Identity: Implementation and Assessment of Accuracy and Efficiency.

Authors:  Kevin Reiter; Fabian Mack; Florian Weigend
Journal:  J Chem Theory Comput       Date:  2017-12-28       Impact factor: 6.006

9.  Generating Function Approach to Single Vibronic Level Fluorescence Spectra.

Authors:  Enrico Tapavicza
Journal:  J Phys Chem Lett       Date:  2019-09-25       Impact factor: 6.475

10.  How a linear triazene photoisomerizes in a volume-conserving fashion.

Authors:  Alireza Marefat Khah; Lena Grimmelsmann; Johannes Knorr; Patrick Nuernberger; Christof Hättig
Journal:  Phys Chem Chem Phys       Date:  2018-11-14       Impact factor: 3.676

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  60 in total

1.  Substantial π-aromaticity in the anionic heavy-metal cluster [Th@Bi12]4.

Authors:  Armin R Eulenstein; Yannick J Franzke; Niels Lichtenberger; Robert J Wilson; H Lars Deubner; Florian Kraus; Rodolphe Clérac; Florian Weigend; Stefanie Dehnen
Journal:  Nat Chem       Date:  2020-12-07       Impact factor: 24.427

2.  Utilizing Experiment and Theory to Evaluate Rhodamine B ethylenediamine as a Fluorescent Sensor for G-type Nerve Agents.

Authors:  Anna Hamstra; Yajie Cai; Zachary Reynolds; Cody S Griffins; Arnold L Rheingold; Nicholas J Schaaf; Ekkehard Sinn; Jefferson E Bates; Aruna J Weerasinghe
Journal:  J Fluoresc       Date:  2022-02-26       Impact factor: 2.217

3.  Quantum Chemistry Common Driver and Databases (QCDB) and Quantum Chemistry Engine (QCEngine): Automation and interoperability among computational chemistry programs.

Authors:  Daniel G A Smith; Annabelle T Lolinco; Zachary L Glick; Jiyoung Lee; Asem Alenaizan; Taylor A Barnes; Carlos H Borca; Roberto Di Remigio; David L Dotson; Sebastian Ehlert; Alexander G Heide; Michael F Herbst; Jan Hermann; Colton B Hicks; Joshua T Horton; Adrian G Hurtado; Peter Kraus; Holger Kruse; Sebastian J R Lee; Jonathon P Misiewicz; Levi N Naden; Farhad Ramezanghorbani; Maximilian Scheurer; Jeffrey B Schriber; Andrew C Simmonett; Johannes Steinmetzer; Jeffrey R Wagner; Logan Ward; Matthew Welborn; Doaa Altarawy; Jamshed Anwar; John D Chodera; Andreas Dreuw; Heather J Kulik; Fang Liu; Todd J Martínez; Devin A Matthews; Henry F Schaefer; Jiří Šponer; Justin M Turney; Lee-Ping Wang; Nuwan De Silva; Rollin A King; John F Stanton; Mark S Gordon; Theresa L Windus; C David Sherrill; Lori A Burns
Journal:  J Chem Phys       Date:  2021-11-28       Impact factor: 3.488

4.  Structural basis of mammalian complex IV inhibition by steroids.

Authors:  Justin M Di Trani; Agnes Moe; Daniel Riepl; Patricia Saura; Ville R I Kaila; Peter Brzezinski; John L Rubinstein
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-19       Impact factor: 12.779

5.  Two-photon conversion of a bacterial phytochrome.

Authors:  Serge G Sokolovski; Evgeny A Zherebtsov; Rajiv K Kar; David Golonka; Robert Stabel; Nikolai B Chichkov; Andrei Gorodetsky; Igor Schapiro; Andreas Möglich; Edik U Rafailov
Journal:  Biophys J       Date:  2021-02-03       Impact factor: 4.033

6.  Role of Acetate Anions in the Catalytic Formation of Isocyanurates from Aromatic Isocyanates.

Authors:  Yunfei Guo; Mikko Muuronen; Peter Deglmann; Frederic Lucas; Rint P Sijbesma; Željko Tomović
Journal:  J Org Chem       Date:  2021-04-01       Impact factor: 4.354

Review 7.  Dynamics & Spectroscopy with Neutrons-Recent Developments & Emerging Opportunities.

Authors:  Kacper Drużbicki; Mattia Gaboardi; Felix Fernandez-Alonso
Journal:  Polymers (Basel)       Date:  2021-04-29       Impact factor: 4.329

8.  Reply to a Comment on "The Nature of Chalcogen-Bonding-Type Tellurium-Nitrogen Interactions".

Authors:  Yury V Vishnevskiy; Norbert W Mitzel
Journal:  Angew Chem Int Ed Engl       Date:  2021-05-07       Impact factor: 15.336

9.  Tridentate 3-Substituted Naphthoquinone Ruthenium Arene Complexes: Synthesis, Characterization, Aqueous Behavior, and Theoretical and Biological Studies.

Authors:  Heiko Geisler; Julia Westermayr; Klaudia Cseh; Dominik Wenisch; Valentin Fuchs; Sophia Harringer; Sarah Plutzar; Natalie Gajic; Michaela Hejl; Michael A Jakupec; Philipp Marquetand; Wolfgang Kandioller
Journal:  Inorg Chem       Date:  2021-06-11       Impact factor: 5.165

10.  Evaluation of log P, pKa, and log D predictions from the SAMPL7 blind challenge.

Authors:  Teresa Danielle Bergazin; Nicolas Tielker; Yingying Zhang; Junjun Mao; M R Gunner; Karol Francisco; Carlo Ballatore; Stefan M Kast; David L Mobley
Journal:  J Comput Aided Mol Des       Date:  2021-06-24       Impact factor: 3.686

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