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Literature DB >> 33604422

Data on DNA-seq analysis of Endophytic Streptomyces sp. SUK 48.

Siti Junaidah Ahmad^1,2, Noraziah Mohamad Zin¹.

Abstract

The data genome sequence of SUK 48 consists of 8,341,706 bp, comprising of one contig with a high G + C content of 72.33%. The genome sequence encodes for 67 tRNAs and 21 rRNAs in one contig. SUK48 was found to have low similarities with other Streptomyces sp. (81-93% ANI indices) indicating that the isolated strain has a unique genome property and is presumably a novel species. This genome includes 34 genetic clusters responsible for the synthesis of secondary metabolites, including two polyketide synthase (PKS) clusters; one PKS type II cluster gene, one PKS gene cluster type III, five NRPS genetic clusters, and five PKS/NRPS hybrid clusters.

Entities: Chemical Disease Species

Keywords: Ethnomedicinal plant; SUK 48; Streptomyces sp.; Whole genome sequence

Year: 2021 PMID： 33604422 PMCID： PMC7873656 DOI： 10.1016/j.dib.2021.106768

Source DB: PubMed Journal: Data Brief ISSN： 2352-3409

12 in total

1. The KEGG resource for deciphering the genome.

Authors: Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Yasushi Okuno; Masahiro Hattori
Journal: Nucleic Acids Res Date: 2004-01-01 Impact factor: 16.971

2. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.

Authors: Johan Goris; Konstantinos T Konstantinidis; Joel A Klappenbach; Tom Coenye; Peter Vandamme; James M Tiedje
Journal: Int J Syst Evol Microbiol Date: 2007-01 Impact factor: 2.747

3. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.

Authors: Felipe A Simão; Robert M Waterhouse; Panagiotis Ioannidis; Evgenia V Kriventseva; Evgeny M Zdobnov
Journal: Bioinformatics Date: 2015-06-09 Impact factor: 6.937

4. Isolation, Purification, and Characterization of Five Active Diketopiperazine Derivatives from Endophytic Streptomyces SUK 25 with Antimicrobial and Cytotoxic Activities.

Authors: Muhanna Alshaibani; Noraziah Mohamad Zin; Juriyati Jalil; Nik Sidik; Siti Junaidah Ahmad; Nurkhalida Kamal; Ruangelie Edrada-Ebel
Journal: J Microbiol Biotechnol Date: 2017-07-28 Impact factor: 2.351

5. Streptomyces kebangsaanensis sp. nov., an endophytic actinomycete isolated from an ethnomedicinal plant, which produces phenazine-1-carboxylic acid.

Authors: Nurul' Izzah Mohd Sarmin; Geok Yuan Annie Tan; Christopher M M Franco; RuAngelie Edrada-Ebel; Jalifah Latip; Noraziah Mohamad Zin
Journal: Int J Syst Evol Microbiol Date: 2013-05-03 Impact factor: 2.747

Data on DNA-seq analysis of Endophytic Streptomyces sp. SUK 48.

1. The KEGG resource for deciphering the genome.

2. DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.

3. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.

4. Isolation, Purification, and Characterization of Five Active Diketopiperazine Derivatives from Endophytic Streptomyces SUK 25 with Antimicrobial and Cytotoxic Activities.

5. Streptomyces kebangsaanensis sp. nov., an endophytic actinomycete isolated from an ethnomedicinal plant, which produces phenazine-1-carboxylic acid.

6. Antibiotic inhibitors of organellar protein synthesis in Plasmodium falciparum.

7. Anti-Methicillin Resistant Staphylococcus aureus Activity and Optimal Culture Condition of Streptomyces sp. SUK 25.

8. tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.

9. The antiSMASH database version 2: a comprehensive resource on secondary metabolite biosynthetic gene clusters.

10. RNAmmer: consistent and rapid annotation of ribosomal RNA genes.